Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3274

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3273 and Echvi_3274 overlap by 4 nucleotidesEchvi_3274 and Echvi_3275 are separated by 1 nucleotidesEchvi_3275 and Echvi_3276 are separated by 0 nucleotides Echvi_3273: Echvi_3273 - riboflavin kinase/FMN adenylyltransferase, at 3,878,112 to 3,879,041 _3273 Echvi_3274: Echvi_3274 - tRNA pseudouridine 55 synthase, at 3,879,038 to 3,879,712 _3274 Echvi_3275: Echvi_3275 - Uncharacterized bacitracin resistance protein, at 3,879,714 to 3,880,511 _3275 Echvi_3276: Echvi_3276 - Protein of unknown function (DUF3098)., at 3,880,512 to 3,880,679 _3276 Position (kb) 3879 3880Strain fitness (log2 ratio) -2 -1 0 1at 3879.142 kb on - strand, within Echvi_3274at 3879.142 kb on - strand, within Echvi_3274at 3879.142 kb on - strand, within Echvi_3274at 3879.213 kb on - strand, within Echvi_3274at 3879.213 kb on - strand, within Echvi_3274at 3879.291 kb on - strand, within Echvi_3274at 3879.363 kb on - strand, within Echvi_3274at 3879.374 kb on - strand, within Echvi_3274at 3879.392 kb on - strand, within Echvi_3274at 3879.414 kb on - strand, within Echvi_3274at 3879.419 kb on - strand, within Echvi_3274at 3879.447 kb on - strand, within Echvi_3274at 3879.447 kb on - strand, within Echvi_3274at 3879.524 kb on - strand, within Echvi_3274at 3879.526 kb on - strand, within Echvi_3274at 3879.526 kb on - strand, within Echvi_3274at 3879.526 kb on - strand, within Echvi_3274at 3879.629 kb on - strand, within Echvi_3274at 3879.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,879,142 - Echvi_3274 0.15 -0.6
3,879,142 - Echvi_3274 0.15 +0.3
3,879,142 - Echvi_3274 0.15 -0.9
3,879,213 - Echvi_3274 0.26 -0.8
3,879,213 - Echvi_3274 0.26 -0.6
3,879,291 - Echvi_3274 0.37 +0.5
3,879,363 - Echvi_3274 0.48 -0.4
3,879,374 - Echvi_3274 0.50 -2.0
3,879,392 - Echvi_3274 0.52 -0.7
3,879,414 - Echvi_3274 0.56 -1.3
3,879,419 - Echvi_3274 0.56 +0.8
3,879,447 - Echvi_3274 0.61 -0.9
3,879,447 - Echvi_3274 0.61 -1.3
3,879,524 - Echvi_3274 0.72 -1.6
3,879,526 - Echvi_3274 0.72 -0.4
3,879,526 - Echvi_3274 0.72 -1.0
3,879,526 - Echvi_3274 0.72 -0.2
3,879,629 - Echvi_3274 0.88 +0.7
3,879,690 - -0.1

Or see this region's nucleotide sequence