Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2226

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2225 and Echvi_2226 are separated by 210 nucleotidesEchvi_2226 and Echvi_2227 are separated by 397 nucleotides Echvi_2225: Echvi_2225 - Transposase DDE domain./Transposase domain (DUF772)., at 2,648,306 to 2,649,658 _2225 Echvi_2226: Echvi_2226 - hypothetical protein, at 2,649,869 to 2,650,105 _2226 Echvi_2227: Echvi_2227 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 2,650,503 to 2,652,392 _2227 Position (kb) 2649 2650 2651Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2648.950 kb on - strand, within Echvi_2225at 2648.950 kb on - strand, within Echvi_2225at 2649.764 kb on + strandat 2649.764 kb on + strandat 2649.783 kb on + strandat 2649.804 kb on + strandat 2649.809 kb on + strandat 2649.809 kb on + strandat 2649.870 kb on + strandat 2649.874 kb on + strandat 2649.875 kb on - strandat 2649.945 kb on - strand, within Echvi_2226at 2649.948 kb on - strand, within Echvi_2226at 2649.950 kb on + strand, within Echvi_2226at 2649.963 kb on - strand, within Echvi_2226at 2649.963 kb on - strand, within Echvi_2226at 2649.963 kb on - strand, within Echvi_2226at 2649.995 kb on + strand, within Echvi_2226at 2650.018 kb on + strand, within Echvi_2226at 2650.018 kb on + strand, within Echvi_2226at 2650.018 kb on + strand, within Echvi_2226at 2650.019 kb on - strand, within Echvi_2226at 2650.120 kb on - strandat 2650.199 kb on - strandat 2650.292 kb on - strandat 2650.317 kb on + strandat 2650.317 kb on + strandat 2650.317 kb on + strandat 2650.317 kb on + strandat 2650.317 kb on + strandat 2650.318 kb on - strandat 2650.318 kb on - strandat 2650.319 kb on + strandat 2650.399 kb on + strandat 2650.400 kb on - strandat 2650.453 kb on + strandat 2650.454 kb on - strandat 2650.504 kb on + strandat 2650.688 kb on - strandat 2650.690 kb on + strandat 2650.690 kb on + strandat 2650.690 kb on + strandat 2650.690 kb on + strandat 2650.694 kb on - strand, within Echvi_2227at 2650.694 kb on - strand, within Echvi_2227at 2650.705 kb on - strand, within Echvi_2227at 2650.710 kb on + strand, within Echvi_2227at 2650.710 kb on + strand, within Echvi_2227at 2650.711 kb on - strand, within Echvi_2227at 2650.713 kb on + strand, within Echvi_2227at 2650.714 kb on - strand, within Echvi_2227at 2650.730 kb on + strand, within Echvi_2227at 2650.730 kb on + strand, within Echvi_2227at 2650.769 kb on + strand, within Echvi_2227at 2650.832 kb on + strand, within Echvi_2227at 2650.832 kb on + strand, within Echvi_2227at 2650.913 kb on - strand, within Echvi_2227at 2650.913 kb on - strand, within Echvi_2227at 2650.965 kb on + strand, within Echvi_2227at 2650.965 kb on + strand, within Echvi_2227at 2650.965 kb on + strand, within Echvi_2227at 2650.982 kb on - strand, within Echvi_2227at 2651.021 kb on + strand, within Echvi_2227at 2651.093 kb on - strand, within Echvi_2227at 2651.093 kb on - strand, within Echvi_2227

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,648,950 - Echvi_2225 0.48 -0.4
2,648,950 - Echvi_2225 0.48 +1.0
2,649,764 + -1.4
2,649,764 + +1.0
2,649,783 + -0.3
2,649,804 + -2.3
2,649,809 + +0.6
2,649,809 + +1.0
2,649,870 + -0.0
2,649,874 + +0.1
2,649,875 - -0.6
2,649,945 - Echvi_2226 0.32 +0.8
2,649,948 - Echvi_2226 0.33 -0.3
2,649,950 + Echvi_2226 0.34 +0.4
2,649,963 - Echvi_2226 0.40 -0.8
2,649,963 - Echvi_2226 0.40 +0.5
2,649,963 - Echvi_2226 0.40 -0.1
2,649,995 + Echvi_2226 0.53 +1.6
2,650,018 + Echvi_2226 0.63 +0.4
2,650,018 + Echvi_2226 0.63 -0.4
2,650,018 + Echvi_2226 0.63 +2.0
2,650,019 - Echvi_2226 0.63 +1.4
2,650,120 - -0.6
2,650,199 - +2.0
2,650,292 - -0.4
2,650,317 + +0.5
2,650,317 + +0.1
2,650,317 + +0.7
2,650,317 + +1.0
2,650,317 + +0.2
2,650,318 - -0.9
2,650,318 - -1.2
2,650,319 + +1.0
2,650,399 + -0.5
2,650,400 - -0.4
2,650,453 + +0.1
2,650,454 - +0.8
2,650,504 + +0.4
2,650,688 - +1.0
2,650,690 + -3.1
2,650,690 + -2.8
2,650,690 + +0.6
2,650,690 + -1.9
2,650,694 - Echvi_2227 0.10 -3.4
2,650,694 - Echvi_2227 0.10 -0.4
2,650,705 - Echvi_2227 0.11 -0.0
2,650,710 + Echvi_2227 0.11 -1.0
2,650,710 + Echvi_2227 0.11 -2.2
2,650,711 - Echvi_2227 0.11 -0.7
2,650,713 + Echvi_2227 0.11 -2.4
2,650,714 - Echvi_2227 0.11 -2.5
2,650,730 + Echvi_2227 0.12 -3.1
2,650,730 + Echvi_2227 0.12 -1.4
2,650,769 + Echvi_2227 0.14 -2.7
2,650,832 + Echvi_2227 0.17 -2.9
2,650,832 + Echvi_2227 0.17 -2.9
2,650,913 - Echvi_2227 0.22 -2.9
2,650,913 - Echvi_2227 0.22 -1.7
2,650,965 + Echvi_2227 0.24 -0.0
2,650,965 + Echvi_2227 0.24 +0.7
2,650,965 + Echvi_2227 0.24 +2.0
2,650,982 - Echvi_2227 0.25 -1.6
2,651,021 + Echvi_2227 0.27 -1.9
2,651,093 - Echvi_2227 0.31 -1.4
2,651,093 - Echvi_2227 0.31 -2.8

Or see this region's nucleotide sequence