Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0378

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0376 and Echvi_0377 are separated by 63 nucleotidesEchvi_0377 and Echvi_0378 are separated by 67 nucleotidesEchvi_0378 and Echvi_0379 are separated by 166 nucleotides Echvi_0376: Echvi_0376 - hypothetical protein, at 403,299 to 403,862 _0376 Echvi_0377: Echvi_0377 - hypothetical protein, at 403,926 to 404,474 _0377 Echvi_0378: Echvi_0378 - hypothetical protein, at 404,542 to 404,688 _0378 Echvi_0379: Echvi_0379 - FOG: Transposase and inactivated derivatives, at 404,855 to 406,087 _0379 Position (kb) 404 405Strain fitness (log2 ratio) -2 -1 0 1 2at 403.553 kb on - strand, within Echvi_0376at 403.591 kb on + strand, within Echvi_0376at 403.653 kb on + strand, within Echvi_0376at 403.666 kb on + strand, within Echvi_0376at 403.671 kb on - strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.675 kb on - strandat 403.676 kb on + strand, within Echvi_0376at 403.676 kb on + strand, within Echvi_0376at 403.679 kb on + strand, within Echvi_0376at 403.757 kb on + strand, within Echvi_0376at 403.786 kb on + strand, within Echvi_0376at 403.786 kb on + strand, within Echvi_0376at 403.787 kb on - strand, within Echvi_0376at 403.823 kb on + strandat 403.824 kb on - strandat 403.862 kb on + strandat 403.862 kb on + strandat 403.882 kb on + strandat 403.883 kb on - strandat 403.883 kb on - strandat 403.944 kb on - strandat 404.000 kb on + strand, within Echvi_0377at 404.001 kb on - strand, within Echvi_0377at 404.001 kb on - strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.005 kb on - strand, within Echvi_0377at 404.069 kb on + strand, within Echvi_0377at 404.069 kb on + strand, within Echvi_0377at 404.079 kb on + strand, within Echvi_0377at 404.080 kb on - strand, within Echvi_0377at 404.105 kb on + strand, within Echvi_0377at 404.127 kb on + strand, within Echvi_0377at 404.127 kb on + strand, within Echvi_0377at 404.189 kb on + strand, within Echvi_0377at 404.190 kb on - strand, within Echvi_0377at 404.209 kb on + strand, within Echvi_0377at 404.210 kb on - strand, within Echvi_0377at 404.348 kb on + strand, within Echvi_0377at 404.348 kb on + strand, within Echvi_0377at 404.360 kb on + strand, within Echvi_0377at 404.360 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.426 kb on - strandat 404.429 kb on + strandat 404.433 kb on + strandat 404.433 kb on + strandat 404.487 kb on + strandat 404.493 kb on + strandat 404.493 kb on + strandat 404.523 kb on + strandat 404.618 kb on + strand, within Echvi_0378at 404.619 kb on - strand, within Echvi_0378at 404.619 kb on - strand, within Echvi_0378at 404.621 kb on + strand, within Echvi_0378at 404.622 kb on - strand, within Echvi_0378at 404.622 kb on - strand, within Echvi_0378at 404.674 kb on - strandat 404.674 kb on - strandat 404.676 kb on - strandat 404.676 kb on - strandat 404.679 kb on - strandat 404.687 kb on - strandat 404.704 kb on + strandat 404.750 kb on - strandat 404.803 kb on - strandat 404.803 kb on - strandat 404.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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403,553 - Echvi_0376 0.45 +0.8
403,591 + Echvi_0376 0.52 -0.1
403,653 + Echvi_0376 0.63 -1.0
403,666 + Echvi_0376 0.65 -0.3
403,671 - Echvi_0376 0.66 -0.1
403,674 + Echvi_0376 0.66 +0.4
403,674 + Echvi_0376 0.66 +0.7
403,674 + Echvi_0376 0.66 +0.2
403,674 + Echvi_0376 0.66 -1.0
403,674 + Echvi_0376 0.66 -0.2
403,675 - +1.6
403,676 + Echvi_0376 0.67 +0.2
403,676 + Echvi_0376 0.67 +0.4
403,679 + Echvi_0376 0.67 +1.0
403,757 + Echvi_0376 0.81 -0.6
403,786 + Echvi_0376 0.86 +1.0
403,786 + Echvi_0376 0.86 -1.1
403,787 - Echvi_0376 0.87 -0.3
403,823 + -1.6
403,824 - -0.6
403,862 + +1.3
403,862 + +0.3
403,882 + -0.3
403,883 - -0.7
403,883 - -0.1
403,944 - +0.1
404,000 + Echvi_0377 0.13 +0.4
404,001 - Echvi_0377 0.14 +0.8
404,001 - Echvi_0377 0.14 -0.6
404,004 + Echvi_0377 0.14 -0.7
404,004 + Echvi_0377 0.14 -0.1
404,004 + Echvi_0377 0.14 -0.1
404,005 - Echvi_0377 0.14 +1.7
404,069 + Echvi_0377 0.26 -0.4
404,069 + Echvi_0377 0.26 -0.7
404,079 + Echvi_0377 0.28 +0.0
404,080 - Echvi_0377 0.28 +1.0
404,105 + Echvi_0377 0.33 +0.2
404,127 + Echvi_0377 0.37 -0.2
404,127 + Echvi_0377 0.37 -0.3
404,189 + Echvi_0377 0.48 +0.0
404,190 - Echvi_0377 0.48 +0.8
404,209 + Echvi_0377 0.52 +0.1
404,210 - Echvi_0377 0.52 -2.0
404,348 + Echvi_0377 0.77 -0.3
404,348 + Echvi_0377 0.77 +0.4
404,360 + Echvi_0377 0.79 -0.8
404,360 + Echvi_0377 0.79 +1.8
404,381 + Echvi_0377 0.83 -0.0
404,381 + Echvi_0377 0.83 +0.8
404,381 + Echvi_0377 0.83 +0.5
404,426 - +0.3
404,429 + +0.3
404,433 + -0.0
404,433 + -0.0
404,487 + +0.3
404,493 + +0.0
404,493 + +0.9
404,523 + -0.5
404,618 + Echvi_0378 0.52 -0.2
404,619 - Echvi_0378 0.52 -1.6
404,619 - Echvi_0378 0.52 -2.2
404,621 + Echvi_0378 0.54 -1.1
404,622 - Echvi_0378 0.54 -1.8
404,622 - Echvi_0378 0.54 +0.0
404,674 - +0.1
404,674 - -0.1
404,676 - +2.0
404,676 - -0.3
404,679 - +0.3
404,687 - -1.6
404,704 + -0.0
404,750 - +0.1
404,803 - -1.1
404,803 - +2.6
404,807 - +0.1

Or see this region's nucleotide sequence