Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04150 and ECD_04152 are separated by 777 nucleotides ECD_04152 and ECD_04153 are separated by 556 nucleotides
ECD_04150: ECD_04150 - IS600 ORF1-like protein, at 4,422,037 to 4,422,339
_04150
ECD_04152: ECD_04152 - hypothetical protein, at 4,423,117 to 4,423,530
_04152
ECD_04153: ECD_04153 - ferric citrate ABC transporter ATPase, at 4,424,087 to 4,424,854
_04153
Position (kb)
4423
4424 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4422.217 kb on + strand, within ECD_04150 at 4422.317 kb on + strand at 4422.317 kb on + strand at 4422.317 kb on + strand at 4422.317 kb on + strand at 4422.318 kb on - strand at 4422.340 kb on + strand at 4422.340 kb on + strand at 4422.341 kb on - strand at 4422.344 kb on - strand at 4422.897 kb on - strand at 4422.920 kb on - strand at 4422.948 kb on - strand at 4423.035 kb on + strand at 4423.036 kb on - strand at 4423.036 kb on - strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.040 kb on - strand at 4423.040 kb on - strand at 4423.075 kb on - strand at 4423.075 kb on - strand at 4423.077 kb on - strand at 4423.089 kb on + strand at 4423.113 kb on + strand at 4423.113 kb on + strand at 4423.115 kb on + strand at 4423.115 kb on + strand at 4423.185 kb on - strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.203 kb on - strand, within ECD_04152 at 4423.238 kb on + strand, within ECD_04152 at 4423.263 kb on - strand, within ECD_04152 at 4423.263 kb on - strand, within ECD_04152 at 4423.361 kb on - strand, within ECD_04152 at 4423.462 kb on - strand, within ECD_04152 at 4423.492 kb on - strand at 4423.492 kb on - strand at 4423.526 kb on + strand at 4423.526 kb on + strand at 4423.563 kb on - strand at 4423.563 kb on - strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.566 kb on + strand at 4423.567 kb on - strand at 4423.567 kb on - strand at 4423.567 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.571 kb on - strand at 4423.650 kb on + strand at 4423.651 kb on - strand at 4423.674 kb on + strand at 4423.774 kb on + strand at 4423.978 kb on + strand at 4424.088 kb on + strand at 4424.133 kb on - strand at 4424.206 kb on + strand, within ECD_04153 at 4424.260 kb on + strand, within ECD_04153 at 4424.344 kb on + strand, within ECD_04153 at 4424.352 kb on + strand, within ECD_04153 at 4424.353 kb on - strand, within ECD_04153 at 4424.373 kb on - strand, within ECD_04153 at 4424.375 kb on + strand, within ECD_04153 at 4424.497 kb on + strand, within ECD_04153
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 4,422,217 + ECD_04150 0.59 -2.6 4,422,317 + +0.4 4,422,317 + +0.2 4,422,317 + +0.4 4,422,317 + +0.8 4,422,318 - +0.1 4,422,340 + +0.5 4,422,340 + +2.4 4,422,341 - +0.4 4,422,344 - +0.4 4,422,897 - -0.5 4,422,920 - +0.6 4,422,948 - -0.1 4,423,035 + +1.8 4,423,036 - +0.5 4,423,036 - -0.9 4,423,039 + +1.6 4,423,039 + +0.2 4,423,039 + +0.0 4,423,039 + -2.3 4,423,039 + -0.3 4,423,039 + +1.0 4,423,040 - +0.4 4,423,040 - -0.2 4,423,075 - +0.7 4,423,075 - -2.6 4,423,077 - +3.2 4,423,089 + -0.8 4,423,113 + -2.5 4,423,113 + +0.3 4,423,115 + +0.1 4,423,115 + +0.4 4,423,185 - ECD_04152 0.16 +1.5 4,423,202 + ECD_04152 0.21 +1.5 4,423,202 + ECD_04152 0.21 -2.2 4,423,202 + ECD_04152 0.21 -0.2 4,423,203 - ECD_04152 0.21 +1.4 4,423,238 + ECD_04152 0.29 +2.2 4,423,263 - ECD_04152 0.35 -1.3 4,423,263 - ECD_04152 0.35 -0.5 4,423,361 - ECD_04152 0.59 -2.9 4,423,462 - ECD_04152 0.83 +1.2 4,423,492 - -1.3 4,423,492 - -2.2 4,423,526 + -0.8 4,423,526 + +0.3 4,423,563 - +0.1 4,423,563 - -0.0 4,423,566 + -0.0 4,423,566 + +0.2 4,423,566 + -2.2 4,423,566 + -0.8 4,423,566 + +0.7 4,423,566 + +1.6 4,423,566 + +1.3 4,423,567 - +0.3 4,423,567 - -0.7 4,423,567 - -0.2 4,423,571 - -0.5 4,423,571 - +1.1 4,423,571 - +1.1 4,423,571 - +0.2 4,423,571 - -2.7 4,423,571 - -1.0 4,423,650 + +0.9 4,423,651 - +1.8 4,423,674 + +1.9 4,423,774 + +1.1 4,423,978 + +0.4 4,424,088 + -0.9 4,424,133 - +0.2 4,424,206 + ECD_04153 0.15 -1.0 4,424,260 + ECD_04153 0.23 -2.5 4,424,344 + ECD_04153 0.33 -1.6 4,424,352 + ECD_04153 0.35 -0.4 4,424,353 - ECD_04153 0.35 -2.4 4,424,373 - ECD_04153 0.37 +0.9 4,424,375 + ECD_04153 0.38 +1.7 4,424,497 + ECD_04153 0.53 -3.6
Or see this region's nucleotide sequence