Strain Fitness in Escherichia coli BL21 around ECD_04102

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04101 and ECD_04102 are separated by 155 nucleotidesECD_04102 and ECD_04103 are separated by 94 nucleotides ECD_04101: ECD_04101 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 4,367,400 to 4,368,773 _04101 ECD_04102: ECD_04102 - ribosome-associated UPF0307 family protein, at 4,368,929 to 4,369,480 _04102 ECD_04103: ECD_04103 - putative antibiotic peptide MccB17 maturation peptidase, at 4,369,575 to 4,370,927 _04103 Position (kb) 4368 4369 4370Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4368.026 kb on + strand, within ECD_04101at 4368.027 kb on - strand, within ECD_04101at 4368.047 kb on + strand, within ECD_04101at 4368.050 kb on + strand, within ECD_04101at 4368.236 kb on + strand, within ECD_04101at 4368.236 kb on + strand, within ECD_04101at 4368.236 kb on + strand, within ECD_04101at 4368.236 kb on + strand, within ECD_04101at 4368.240 kb on - strand, within ECD_04101at 4368.240 kb on - strand, within ECD_04101at 4368.240 kb on - strand, within ECD_04101at 4368.326 kb on + strand, within ECD_04101at 4368.376 kb on + strand, within ECD_04101at 4368.376 kb on + strand, within ECD_04101at 4368.377 kb on - strand, within ECD_04101at 4368.378 kb on + strand, within ECD_04101at 4368.379 kb on - strand, within ECD_04101at 4368.533 kb on - strand, within ECD_04101at 4368.653 kb on + strandat 4368.654 kb on - strandat 4368.686 kb on + strandat 4368.686 kb on + strandat 4368.792 kb on + strandat 4368.792 kb on + strandat 4368.792 kb on + strandat 4368.792 kb on + strandat 4368.792 kb on + strandat 4368.793 kb on - strandat 4368.793 kb on - strandat 4368.793 kb on - strandat 4368.872 kb on + strandat 4368.873 kb on - strandat 4368.873 kb on - strandat 4368.882 kb on - strandat 4368.908 kb on + strandat 4368.909 kb on - strandat 4368.994 kb on + strand, within ECD_04102at 4369.034 kb on - strand, within ECD_04102at 4369.132 kb on + strand, within ECD_04102at 4369.133 kb on + strand, within ECD_04102at 4369.133 kb on - strand, within ECD_04102at 4369.261 kb on + strand, within ECD_04102at 4369.262 kb on - strand, within ECD_04102at 4369.262 kb on - strand, within ECD_04102at 4369.262 kb on - strand, within ECD_04102at 4369.262 kb on - strand, within ECD_04102at 4369.262 kb on - strand, within ECD_04102at 4369.264 kb on + strand, within ECD_04102at 4369.315 kb on + strand, within ECD_04102at 4369.474 kb on + strandat 4369.475 kb on - strandat 4369.475 kb on - strandat 4369.475 kb on - strandat 4369.512 kb on + strandat 4369.519 kb on + strandat 4369.570 kb on - strandat 4369.575 kb on - strandat 4369.575 kb on - strandat 4369.718 kb on - strand, within ECD_04103at 4369.785 kb on + strand, within ECD_04103at 4369.881 kb on - strand, within ECD_04103at 4370.126 kb on + strand, within ECD_04103at 4370.152 kb on + strand, within ECD_04103at 4370.152 kb on + strand, within ECD_04103at 4370.152 kb on + strand, within ECD_04103at 4370.153 kb on - strand, within ECD_04103at 4370.187 kb on + strand, within ECD_04103at 4370.193 kb on + strand, within ECD_04103at 4370.194 kb on - strand, within ECD_04103at 4370.393 kb on + strand, within ECD_04103

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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4,368,026 + ECD_04101 0.46 +0.7
4,368,027 - ECD_04101 0.46 -0.1
4,368,047 + ECD_04101 0.47 -1.4
4,368,050 + ECD_04101 0.47 +2.0
4,368,236 + ECD_04101 0.61 +2.0
4,368,236 + ECD_04101 0.61 -2.4
4,368,236 + ECD_04101 0.61 +0.5
4,368,236 + ECD_04101 0.61 -1.3
4,368,240 - ECD_04101 0.61 +0.5
4,368,240 - ECD_04101 0.61 -1.9
4,368,240 - ECD_04101 0.61 +0.7
4,368,326 + ECD_04101 0.67 +0.1
4,368,376 + ECD_04101 0.71 +2.0
4,368,376 + ECD_04101 0.71 -2.4
4,368,377 - ECD_04101 0.71 -0.9
4,368,378 + ECD_04101 0.71 +0.1
4,368,379 - ECD_04101 0.71 -0.8
4,368,533 - ECD_04101 0.82 -0.8
4,368,653 + -1.9
4,368,654 - -1.6
4,368,686 + -0.7
4,368,686 + -1.2
4,368,792 + -0.6
4,368,792 + -0.2
4,368,792 + +0.3
4,368,792 + +1.4
4,368,792 + +0.2
4,368,793 - -0.1
4,368,793 - -0.8
4,368,793 - +1.8
4,368,872 + +0.8
4,368,873 - +1.8
4,368,873 - +0.2
4,368,882 - -0.3
4,368,908 + -1.5
4,368,909 - -1.2
4,368,994 + ECD_04102 0.12 +1.7
4,369,034 - ECD_04102 0.19 +1.2
4,369,132 + ECD_04102 0.37 -0.0
4,369,133 + ECD_04102 0.37 -0.9
4,369,133 - ECD_04102 0.37 +0.1
4,369,261 + ECD_04102 0.60 -0.8
4,369,262 - ECD_04102 0.60 +0.2
4,369,262 - ECD_04102 0.60 -1.2
4,369,262 - ECD_04102 0.60 +1.9
4,369,262 - ECD_04102 0.60 +1.0
4,369,262 - ECD_04102 0.60 +0.2
4,369,264 + ECD_04102 0.61 +0.7
4,369,315 + ECD_04102 0.70 +0.3
4,369,474 + -1.0
4,369,475 - -1.1
4,369,475 - -1.8
4,369,475 - +0.5
4,369,512 + +2.0
4,369,519 + +0.2
4,369,570 - +0.1
4,369,575 - +1.3
4,369,575 - -0.3
4,369,718 - ECD_04103 0.11 +1.2
4,369,785 + ECD_04103 0.16 -0.2
4,369,881 - ECD_04103 0.23 +0.3
4,370,126 + ECD_04103 0.41 +0.8
4,370,152 + ECD_04103 0.43 +1.9
4,370,152 + ECD_04103 0.43 -0.6
4,370,152 + ECD_04103 0.43 -3.0
4,370,153 - ECD_04103 0.43 -0.7
4,370,187 + ECD_04103 0.45 -1.3
4,370,193 + ECD_04103 0.46 -2.0
4,370,194 - ECD_04103 0.46 +1.2
4,370,393 + ECD_04103 0.60 -3.3

Or see this region's nucleotide sequence