Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04101 and ECD_04102 are separated by 155 nucleotides ECD_04102 and ECD_04103 are separated by 94 nucleotides
ECD_04101: ECD_04101 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 4,367,400 to 4,368,773
_04101
ECD_04102: ECD_04102 - ribosome-associated UPF0307 family protein, at 4,368,929 to 4,369,480
_04102
ECD_04103: ECD_04103 - putative antibiotic peptide MccB17 maturation peptidase, at 4,369,575 to 4,370,927
_04103
Position (kb)
4368
4369
4370 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4368.026 kb on + strand, within ECD_04101 at 4368.027 kb on - strand, within ECD_04101 at 4368.047 kb on + strand, within ECD_04101 at 4368.050 kb on + strand, within ECD_04101 at 4368.236 kb on + strand, within ECD_04101 at 4368.236 kb on + strand, within ECD_04101 at 4368.236 kb on + strand, within ECD_04101 at 4368.236 kb on + strand, within ECD_04101 at 4368.240 kb on - strand, within ECD_04101 at 4368.240 kb on - strand, within ECD_04101 at 4368.240 kb on - strand, within ECD_04101 at 4368.326 kb on + strand, within ECD_04101 at 4368.376 kb on + strand, within ECD_04101 at 4368.376 kb on + strand, within ECD_04101 at 4368.377 kb on - strand, within ECD_04101 at 4368.378 kb on + strand, within ECD_04101 at 4368.379 kb on - strand, within ECD_04101 at 4368.533 kb on - strand, within ECD_04101 at 4368.653 kb on + strand at 4368.654 kb on - strand at 4368.686 kb on + strand at 4368.686 kb on + strand at 4368.792 kb on + strand at 4368.792 kb on + strand at 4368.792 kb on + strand at 4368.792 kb on + strand at 4368.792 kb on + strand at 4368.793 kb on - strand at 4368.793 kb on - strand at 4368.793 kb on - strand at 4368.872 kb on + strand at 4368.873 kb on - strand at 4368.873 kb on - strand at 4368.882 kb on - strand at 4368.908 kb on + strand at 4368.909 kb on - strand at 4368.994 kb on + strand, within ECD_04102 at 4369.034 kb on - strand, within ECD_04102 at 4369.132 kb on + strand, within ECD_04102 at 4369.133 kb on + strand, within ECD_04102 at 4369.133 kb on - strand, within ECD_04102 at 4369.261 kb on + strand, within ECD_04102 at 4369.262 kb on - strand, within ECD_04102 at 4369.262 kb on - strand, within ECD_04102 at 4369.262 kb on - strand, within ECD_04102 at 4369.262 kb on - strand, within ECD_04102 at 4369.262 kb on - strand, within ECD_04102 at 4369.264 kb on + strand, within ECD_04102 at 4369.315 kb on + strand, within ECD_04102 at 4369.474 kb on + strand at 4369.475 kb on - strand at 4369.475 kb on - strand at 4369.475 kb on - strand at 4369.512 kb on + strand at 4369.519 kb on + strand at 4369.570 kb on - strand at 4369.575 kb on - strand at 4369.575 kb on - strand at 4369.718 kb on - strand, within ECD_04103 at 4369.785 kb on + strand, within ECD_04103 at 4369.881 kb on - strand, within ECD_04103 at 4370.126 kb on + strand, within ECD_04103 at 4370.152 kb on + strand, within ECD_04103 at 4370.152 kb on + strand, within ECD_04103 at 4370.152 kb on + strand, within ECD_04103 at 4370.153 kb on - strand, within ECD_04103 at 4370.187 kb on + strand, within ECD_04103 at 4370.193 kb on + strand, within ECD_04103 at 4370.194 kb on - strand, within ECD_04103 at 4370.393 kb on + strand, within ECD_04103
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 4,368,026 + ECD_04101 0.46 +0.7 4,368,027 - ECD_04101 0.46 -0.1 4,368,047 + ECD_04101 0.47 -1.4 4,368,050 + ECD_04101 0.47 +2.0 4,368,236 + ECD_04101 0.61 +2.0 4,368,236 + ECD_04101 0.61 -2.4 4,368,236 + ECD_04101 0.61 +0.5 4,368,236 + ECD_04101 0.61 -1.3 4,368,240 - ECD_04101 0.61 +0.5 4,368,240 - ECD_04101 0.61 -1.9 4,368,240 - ECD_04101 0.61 +0.7 4,368,326 + ECD_04101 0.67 +0.1 4,368,376 + ECD_04101 0.71 +2.0 4,368,376 + ECD_04101 0.71 -2.4 4,368,377 - ECD_04101 0.71 -0.9 4,368,378 + ECD_04101 0.71 +0.1 4,368,379 - ECD_04101 0.71 -0.8 4,368,533 - ECD_04101 0.82 -0.8 4,368,653 + -1.9 4,368,654 - -1.6 4,368,686 + -0.7 4,368,686 + -1.2 4,368,792 + -0.6 4,368,792 + -0.2 4,368,792 + +0.3 4,368,792 + +1.4 4,368,792 + +0.2 4,368,793 - -0.1 4,368,793 - -0.8 4,368,793 - +1.8 4,368,872 + +0.8 4,368,873 - +1.8 4,368,873 - +0.2 4,368,882 - -0.3 4,368,908 + -1.5 4,368,909 - -1.2 4,368,994 + ECD_04102 0.12 +1.7 4,369,034 - ECD_04102 0.19 +1.2 4,369,132 + ECD_04102 0.37 -0.0 4,369,133 + ECD_04102 0.37 -0.9 4,369,133 - ECD_04102 0.37 +0.1 4,369,261 + ECD_04102 0.60 -0.8 4,369,262 - ECD_04102 0.60 +0.2 4,369,262 - ECD_04102 0.60 -1.2 4,369,262 - ECD_04102 0.60 +1.9 4,369,262 - ECD_04102 0.60 +1.0 4,369,262 - ECD_04102 0.60 +0.2 4,369,264 + ECD_04102 0.61 +0.7 4,369,315 + ECD_04102 0.70 +0.3 4,369,474 + -1.0 4,369,475 - -1.1 4,369,475 - -1.8 4,369,475 - +0.5 4,369,512 + +2.0 4,369,519 + +0.2 4,369,570 - +0.1 4,369,575 - +1.3 4,369,575 - -0.3 4,369,718 - ECD_04103 0.11 +1.2 4,369,785 + ECD_04103 0.16 -0.2 4,369,881 - ECD_04103 0.23 +0.3 4,370,126 + ECD_04103 0.41 +0.8 4,370,152 + ECD_04103 0.43 +1.9 4,370,152 + ECD_04103 0.43 -0.6 4,370,152 + ECD_04103 0.43 -3.0 4,370,153 - ECD_04103 0.43 -0.7 4,370,187 + ECD_04103 0.45 -1.3 4,370,193 + ECD_04103 0.46 -2.0 4,370,194 - ECD_04103 0.46 +1.2 4,370,393 + ECD_04103 0.60 -3.3
Or see this region's nucleotide sequence