Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04074 and ECD_04075 are separated by 9 nucleotides ECD_04075 and ECD_04076 are separated by 9 nucleotides ECD_04076 and ECD_04077 are separated by 533 nucleotides ECD_04077 and ECD_04078 overlap by 17 nucleotides
ECD_04074: ECD_04074 - hypothetical protein, at 4,338,169 to 4,338,945
_04074
ECD_04075: ECD_04075 - hypothetical protein, at 4,338,955 to 4,339,797
_04075
ECD_04076: ECD_04076 - putative oxoacyl reductase, at 4,339,807 to 4,340,598
_04076
ECD_04077: ECD_04077 - putative transcriptional regulator, at 4,341,132 to 4,341,458
_04077
ECD_04078: ECD_04078 - OapA family protein, at 4,341,442 to 4,342,080
_04078
Position (kb) 4339
4340
4341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4338.876 kb on + strand at 4338.877 kb on - strand at 4339.048 kb on - strand, within ECD_04075 at 4339.154 kb on - strand, within ECD_04075 at 4339.313 kb on - strand, within ECD_04075 at 4339.424 kb on - strand, within ECD_04075 at 4339.485 kb on + strand, within ECD_04075 at 4339.485 kb on + strand, within ECD_04075 at 4339.486 kb on - strand, within ECD_04075 at 4339.486 kb on - strand, within ECD_04075 at 4339.487 kb on + strand, within ECD_04075 at 4339.487 kb on + strand, within ECD_04075 at 4339.487 kb on + strand, within ECD_04075 at 4339.487 kb on + strand, within ECD_04075 at 4339.487 kb on + strand, within ECD_04075 at 4339.487 kb on + strand, within ECD_04075 at 4339.488 kb on - strand, within ECD_04075 at 4339.577 kb on + strand, within ECD_04075 at 4339.578 kb on - strand, within ECD_04075 at 4339.580 kb on + strand, within ECD_04075 at 4339.581 kb on - strand, within ECD_04075 at 4339.581 kb on - strand, within ECD_04075 at 4339.761 kb on + strand at 4339.762 kb on - strand at 4339.825 kb on + strand at 4339.965 kb on - strand, within ECD_04076 at 4339.967 kb on + strand, within ECD_04076 at 4340.040 kb on + strand, within ECD_04076 at 4340.040 kb on + strand, within ECD_04076 at 4340.041 kb on - strand, within ECD_04076 at 4340.099 kb on + strand, within ECD_04076 at 4340.152 kb on - strand, within ECD_04076 at 4340.244 kb on + strand, within ECD_04076 at 4340.437 kb on + strand, within ECD_04076 at 4340.599 kb on - strand at 4340.604 kb on - strand at 4340.604 kb on - strand at 4340.621 kb on + strand at 4340.779 kb on + strand at 4340.779 kb on + strand at 4340.780 kb on - strand at 4340.783 kb on + strand at 4340.783 kb on + strand at 4340.811 kb on - strand at 4340.815 kb on - strand at 4340.861 kb on - strand at 4341.316 kb on - strand, within ECD_04077 at 4341.332 kb on + strand, within ECD_04077 at 4341.348 kb on + strand, within ECD_04077 at 4341.359 kb on + strand, within ECD_04077 at 4341.392 kb on + strand, within ECD_04077 at 4341.392 kb on + strand, within ECD_04077 at 4341.392 kb on + strand, within ECD_04077 at 4341.392 kb on + strand, within ECD_04077 at 4341.393 kb on - strand, within ECD_04077 at 4341.443 kb on + strand at 4341.592 kb on - strand, within ECD_04078
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 4,338,876 + +0.2 4,338,877 - +1.1 4,339,048 - ECD_04075 0.11 +2.1 4,339,154 - ECD_04075 0.24 +1.4 4,339,313 - ECD_04075 0.42 -1.1 4,339,424 - ECD_04075 0.56 +0.3 4,339,485 + ECD_04075 0.63 +0.5 4,339,485 + ECD_04075 0.63 +2.0 4,339,486 - ECD_04075 0.63 -1.3 4,339,486 - ECD_04075 0.63 +1.2 4,339,487 + ECD_04075 0.63 +0.4 4,339,487 + ECD_04075 0.63 -1.8 4,339,487 + ECD_04075 0.63 +0.7 4,339,487 + ECD_04075 0.63 +0.5 4,339,487 + ECD_04075 0.63 +0.4 4,339,487 + ECD_04075 0.63 +0.3 4,339,488 - ECD_04075 0.63 -0.6 4,339,577 + ECD_04075 0.74 +0.9 4,339,578 - ECD_04075 0.74 +2.8 4,339,580 + ECD_04075 0.74 +0.6 4,339,581 - ECD_04075 0.74 -1.9 4,339,581 - ECD_04075 0.74 +2.2 4,339,761 + +2.7 4,339,762 - +0.8 4,339,825 + +1.5 4,339,965 - ECD_04076 0.20 +0.5 4,339,967 + ECD_04076 0.20 +0.3 4,340,040 + ECD_04076 0.29 +0.4 4,340,040 + ECD_04076 0.29 +0.1 4,340,041 - ECD_04076 0.30 -0.6 4,340,099 + ECD_04076 0.37 -1.1 4,340,152 - ECD_04076 0.44 -1.4 4,340,244 + ECD_04076 0.55 -0.9 4,340,437 + ECD_04076 0.80 -0.6 4,340,599 - -2.1 4,340,604 - +0.4 4,340,604 - -1.1 4,340,621 + +0.1 4,340,779 + +0.6 4,340,779 + +1.1 4,340,780 - +2.1 4,340,783 + -3.0 4,340,783 + +0.8 4,340,811 - +0.2 4,340,815 - +2.9 4,340,861 - +1.1 4,341,316 - ECD_04077 0.56 -1.4 4,341,332 + ECD_04077 0.61 +0.9 4,341,348 + ECD_04077 0.66 +2.1 4,341,359 + ECD_04077 0.69 +1.3 4,341,392 + ECD_04077 0.80 +0.7 4,341,392 + ECD_04077 0.80 +1.4 4,341,392 + ECD_04077 0.80 +0.5 4,341,392 + ECD_04077 0.80 +0.7 4,341,393 - ECD_04077 0.80 -0.0 4,341,443 + -0.9 4,341,592 - ECD_04078 0.23 -0.1
Or see this region's nucleotide sequence