Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04029 and ECD_04030 are separated by 21 nucleotides ECD_04030 and ECD_04031 are separated by 96 nucleotides
ECD_04029: ECD_04029 - mechanosensitive channel protein, miniconductance, at 4,292,567 to 4,295,890
_04029
ECD_04030: ECD_04030 - phosphatidylserine decarboxylase, at 4,295,912 to 4,296,880
_04030
ECD_04031: ECD_04031 - ribosome small subunit-dependent GTPase A, at 4,296,977 to 4,298,029
_04031
Position (kb)
4295
4296
4297 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4294.988 kb on - strand, within ECD_04029 at 4295.205 kb on - strand, within ECD_04029 at 4295.205 kb on - strand, within ECD_04029 at 4295.229 kb on + strand, within ECD_04029 at 4295.229 kb on + strand, within ECD_04029 at 4295.230 kb on - strand, within ECD_04029 at 4295.273 kb on + strand, within ECD_04029 at 4295.274 kb on - strand, within ECD_04029 at 4295.283 kb on - strand, within ECD_04029 at 4295.296 kb on + strand, within ECD_04029 at 4295.395 kb on + strand, within ECD_04029 at 4295.396 kb on - strand, within ECD_04029 at 4295.396 kb on - strand, within ECD_04029 at 4295.404 kb on + strand, within ECD_04029 at 4295.630 kb on + strand at 4295.631 kb on - strand at 4295.631 kb on - strand at 4295.631 kb on - strand at 4295.631 kb on - strand at 4295.631 kb on - strand at 4295.686 kb on - strand at 4295.754 kb on - strand at 4295.839 kb on - strand at 4295.879 kb on - strand at 4295.913 kb on + strand at 4296.007 kb on + strand at 4296.027 kb on - strand, within ECD_04030 at 4296.923 kb on - strand at 4296.923 kb on - strand at 4296.967 kb on - strand at 4296.972 kb on - strand at 4296.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 4,294,988 - ECD_04029 0.73 -0.5 4,295,205 - ECD_04029 0.79 -2.2 4,295,205 - ECD_04029 0.79 +0.9 4,295,229 + ECD_04029 0.80 -0.7 4,295,229 + ECD_04029 0.80 +1.3 4,295,230 - ECD_04029 0.80 -1.4 4,295,273 + ECD_04029 0.81 -3.7 4,295,274 - ECD_04029 0.81 -0.3 4,295,283 - ECD_04029 0.82 -0.3 4,295,296 + ECD_04029 0.82 +1.8 4,295,395 + ECD_04029 0.85 +0.1 4,295,396 - ECD_04029 0.85 +0.7 4,295,396 - ECD_04029 0.85 -1.4 4,295,404 + ECD_04029 0.85 -1.3 4,295,630 + -1.1 4,295,631 - -1.0 4,295,631 - -0.3 4,295,631 - +1.9 4,295,631 - +1.4 4,295,631 - +1.5 4,295,686 - +0.1 4,295,754 - -0.2 4,295,839 - +0.6 4,295,879 - +0.8 4,295,913 + -0.8 4,296,007 + +0.3 4,296,027 - ECD_04030 0.12 -0.4 4,296,923 - -1.1 4,296,923 - -0.8 4,296,967 - +0.2 4,296,972 - +0.6 4,296,972 - +0.2
Or see this region's nucleotide sequence