Strain Fitness in Escherichia coli BL21 around ECD_03978

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03976 and ECD_03977 are separated by 24 nucleotidesECD_03977 and ECD_03978 are separated by 132 nucleotidesECD_03978 and ECD_03979 are separated by 557 nucleotides ECD_03976: ECD_03976 - phosphonate ABC transporter periplasmic binding protein, at 4,230,515 to 4,231,531 _03976 ECD_03977: ECD_03977 - phosphonate ABC transporter ATPase, at 4,231,556 to 4,232,344 _03977 ECD_03978: ECD_03978 - metalloprotein superfamily protein, at 4,232,477 to 4,232,920 _03978 ECD_03979: ECD_03979 - zinc-ribbon family protein, at 4,233,478 to 4,233,813 _03979 Position (kb) 4232 4233Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4231.517 kb on + strandat 4231.517 kb on + strandat 4231.517 kb on + strandat 4231.648 kb on - strand, within ECD_03977at 4231.702 kb on - strand, within ECD_03977at 4232.036 kb on + strand, within ECD_03977at 4232.037 kb on - strand, within ECD_03977at 4232.173 kb on + strand, within ECD_03977at 4232.204 kb on + strand, within ECD_03977at 4232.407 kb on - strandat 4232.670 kb on + strand, within ECD_03978at 4232.830 kb on + strand, within ECD_03978at 4232.854 kb on + strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.862 kb on + strand, within ECD_03978at 4232.904 kb on + strandat 4232.905 kb on - strandat 4232.937 kb on - strandat 4232.957 kb on - strandat 4233.044 kb on - strandat 4233.244 kb on - strandat 4233.391 kb on + strandat 4233.473 kb on + strandat 4233.610 kb on - strand, within ECD_03979at 4233.630 kb on + strand, within ECD_03979at 4233.640 kb on - strand, within ECD_03979at 4233.681 kb on + strand, within ECD_03979at 4233.752 kb on + strand, within ECD_03979at 4233.752 kb on + strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.762 kb on + strand, within ECD_03979at 4233.777 kb on - strand, within ECD_03979at 4233.777 kb on - strand, within ECD_03979at 4233.806 kb on - strandat 4233.883 kb on + strandat 4233.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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4,231,517 + +1.1
4,231,517 + -1.1
4,231,517 + +0.5
4,231,648 - ECD_03977 0.12 +1.4
4,231,702 - ECD_03977 0.19 +0.9
4,232,036 + ECD_03977 0.61 +2.2
4,232,037 - ECD_03977 0.61 +1.4
4,232,173 + ECD_03977 0.78 -0.4
4,232,204 + ECD_03977 0.82 -2.2
4,232,407 - +0.3
4,232,670 + ECD_03978 0.43 -1.1
4,232,830 + ECD_03978 0.80 +0.8
4,232,854 + ECD_03978 0.85 -0.1
4,232,855 - ECD_03978 0.85 -0.8
4,232,855 - ECD_03978 0.85 -1.7
4,232,855 - ECD_03978 0.85 +0.2
4,232,862 + ECD_03978 0.87 -0.9
4,232,904 + +0.5
4,232,905 - +0.2
4,232,937 - -1.4
4,232,957 - +2.3
4,233,044 - -3.6
4,233,244 - +1.6
4,233,391 + -1.9
4,233,473 + +0.3
4,233,610 - ECD_03979 0.39 +1.8
4,233,630 + ECD_03979 0.45 -1.4
4,233,640 - ECD_03979 0.48 -1.5
4,233,681 + ECD_03979 0.60 -0.7
4,233,752 + ECD_03979 0.82 -0.3
4,233,752 + ECD_03979 0.82 -0.6
4,233,753 - ECD_03979 0.82 -2.9
4,233,753 - ECD_03979 0.82 -0.4
4,233,753 - ECD_03979 0.82 +0.5
4,233,762 + ECD_03979 0.85 +0.8
4,233,777 - ECD_03979 0.89 +1.4
4,233,777 - ECD_03979 0.89 -2.6
4,233,806 - -0.2
4,233,883 + +1.3
4,233,884 - +0.3

Or see this region's nucleotide sequence