Strain Fitness in Escherichia coli BL21 around ECD_03877

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03875 and ECD_03876 are separated by 42 nucleotidesECD_03876 and ECD_03877 are separated by 186 nucleotidesECD_03877 and ECD_03878 are separated by 12 nucleotidesECD_03878 and ECD_03879 are separated by 1 nucleotides ECD_03875: ECD_03875 - endonuclease V; deoxyinosine 3, at 4,106,842 to 4,107,513 _03875 ECD_03876: ECD_03876 - DUF416 domain protein, at 4,107,556 to 4,108,146 _03876 ECD_03877: ECD_03877 - HU, DNA-binding transcriptional regulator, alpha subunit, at 4,108,333 to 4,108,605 _03877 ECD_03878: ECD_03878 - DUF1481 family putative lipoprotein, at 4,108,618 to 4,109,313 _03878 ECD_03879: ECD_03879 - Zn-dependent periplasmic chaperone, at 4,109,315 to 4,109,734 _03879 Position (kb) 4108 4109Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4107.408 kb on - strand, within ECD_03875at 4107.494 kb on - strandat 4107.494 kb on - strandat 4107.496 kb on - strandat 4107.511 kb on + strandat 4107.629 kb on + strand, within ECD_03876at 4107.644 kb on - strand, within ECD_03876at 4107.652 kb on + strand, within ECD_03876at 4107.652 kb on + strand, within ECD_03876at 4107.653 kb on - strand, within ECD_03876at 4107.653 kb on - strand, within ECD_03876at 4107.915 kb on + strand, within ECD_03876at 4107.916 kb on - strand, within ECD_03876at 4107.916 kb on - strand, within ECD_03876at 4107.916 kb on - strand, within ECD_03876at 4108.005 kb on - strand, within ECD_03876at 4108.005 kb on - strand, within ECD_03876at 4108.035 kb on - strand, within ECD_03876at 4108.046 kb on + strand, within ECD_03876at 4108.046 kb on + strand, within ECD_03876at 4108.122 kb on + strandat 4108.144 kb on + strandat 4108.144 kb on + strandat 4108.145 kb on - strandat 4108.164 kb on + strandat 4108.217 kb on - strandat 4108.217 kb on - strandat 4108.255 kb on + strandat 4108.255 kb on + strandat 4108.255 kb on + strandat 4108.256 kb on - strandat 4108.270 kb on + strandat 4108.300 kb on + strandat 4108.300 kb on + strandat 4108.301 kb on - strandat 4108.321 kb on + strandat 4108.321 kb on + strandat 4108.322 kb on - strandat 4108.327 kb on + strandat 4108.327 kb on + strandat 4108.332 kb on + strandat 4108.332 kb on + strandat 4108.332 kb on + strandat 4108.332 kb on + strandat 4108.332 kb on + strandat 4108.332 kb on + strandat 4108.332 kb on + strandat 4108.333 kb on - strandat 4108.358 kb on + strandat 4108.428 kb on + strand, within ECD_03877at 4108.457 kb on + strand, within ECD_03877at 4108.506 kb on + strand, within ECD_03877at 4108.599 kb on + strandat 4108.599 kb on + strandat 4108.599 kb on + strandat 4108.599 kb on + strandat 4108.599 kb on + strandat 4108.600 kb on - strandat 4108.604 kb on - strandat 4108.604 kb on - strandat 4108.629 kb on + strandat 4108.738 kb on - strand, within ECD_03878at 4108.966 kb on - strand, within ECD_03878at 4108.966 kb on - strand, within ECD_03878at 4109.021 kb on + strand, within ECD_03878at 4109.021 kb on + strand, within ECD_03878at 4109.022 kb on - strand, within ECD_03878at 4109.022 kb on - strand, within ECD_03878at 4109.023 kb on + strand, within ECD_03878at 4109.056 kb on - strand, within ECD_03878at 4109.066 kb on + strand, within ECD_03878at 4109.067 kb on - strand, within ECD_03878at 4109.255 kb on + strandat 4109.255 kb on + strandat 4109.256 kb on - strandat 4109.316 kb on + strandat 4109.316 kb on + strandat 4109.408 kb on - strand, within ECD_03879at 4109.423 kb on + strand, within ECD_03879at 4109.433 kb on - strand, within ECD_03879at 4109.517 kb on + strand, within ECD_03879at 4109.517 kb on + strand, within ECD_03879at 4109.518 kb on - strand, within ECD_03879at 4109.518 kb on - strand, within ECD_03879at 4109.518 kb on - strand, within ECD_03879at 4109.569 kb on - strand, within ECD_03879

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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4,107,408 - ECD_03875 0.84 +1.6
4,107,494 - +0.5
4,107,494 - +1.7
4,107,496 - -0.9
4,107,511 + +0.0
4,107,629 + ECD_03876 0.12 +1.1
4,107,644 - ECD_03876 0.15 +1.3
4,107,652 + ECD_03876 0.16 +0.7
4,107,652 + ECD_03876 0.16 -0.9
4,107,653 - ECD_03876 0.16 +1.1
4,107,653 - ECD_03876 0.16 +2.2
4,107,915 + ECD_03876 0.61 -0.6
4,107,916 - ECD_03876 0.61 +0.6
4,107,916 - ECD_03876 0.61 -1.2
4,107,916 - ECD_03876 0.61 -0.2
4,108,005 - ECD_03876 0.76 +1.4
4,108,005 - ECD_03876 0.76 +2.1
4,108,035 - ECD_03876 0.81 +1.1
4,108,046 + ECD_03876 0.83 -0.8
4,108,046 + ECD_03876 0.83 -2.3
4,108,122 + -3.2
4,108,144 + -2.3
4,108,144 + -2.8
4,108,145 - -2.3
4,108,164 + -2.9
4,108,217 - -3.3
4,108,217 - -2.5
4,108,255 + -2.2
4,108,255 + -3.3
4,108,255 + -0.4
4,108,256 - -3.8
4,108,270 + -5.4
4,108,300 + -3.6
4,108,300 + -4.7
4,108,301 - -3.4
4,108,321 + -4.1
4,108,321 + -3.6
4,108,322 - -3.3
4,108,327 + -2.1
4,108,327 + -3.8
4,108,332 + -4.2
4,108,332 + -4.6
4,108,332 + -4.2
4,108,332 + -4.3
4,108,332 + -4.4
4,108,332 + -1.7
4,108,332 + -3.2
4,108,333 - -4.9
4,108,358 + -3.7
4,108,428 + ECD_03877 0.35 -4.4
4,108,457 + ECD_03877 0.45 -1.7
4,108,506 + ECD_03877 0.63 -5.2
4,108,599 + -3.7
4,108,599 + -4.2
4,108,599 + -5.3
4,108,599 + -3.2
4,108,599 + -3.1
4,108,600 - -3.3
4,108,604 - -2.2
4,108,604 - -2.3
4,108,629 + -1.0
4,108,738 - ECD_03878 0.17 -0.5
4,108,966 - ECD_03878 0.50 -1.1
4,108,966 - ECD_03878 0.50 -3.1
4,109,021 + ECD_03878 0.58 +0.2
4,109,021 + ECD_03878 0.58 -2.2
4,109,022 - ECD_03878 0.58 -1.4
4,109,022 - ECD_03878 0.58 -0.5
4,109,023 + ECD_03878 0.58 +1.9
4,109,056 - ECD_03878 0.63 -1.1
4,109,066 + ECD_03878 0.64 -1.5
4,109,067 - ECD_03878 0.65 +1.2
4,109,255 + +1.6
4,109,255 + +0.9
4,109,256 - +0.8
4,109,316 + +0.8
4,109,316 + +1.0
4,109,408 - ECD_03879 0.22 +1.3
4,109,423 + ECD_03879 0.26 +0.9
4,109,433 - ECD_03879 0.28 -1.3
4,109,517 + ECD_03879 0.48 +1.3
4,109,517 + ECD_03879 0.48 -0.8
4,109,518 - ECD_03879 0.48 -2.0
4,109,518 - ECD_03879 0.48 +1.6
4,109,518 - ECD_03879 0.48 -0.3
4,109,569 - ECD_03879 0.60 +0.7

Or see this region's nucleotide sequence