Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03875 and ECD_03876 are separated by 42 nucleotides ECD_03876 and ECD_03877 are separated by 186 nucleotides ECD_03877 and ECD_03878 are separated by 12 nucleotides ECD_03878 and ECD_03879 are separated by 1 nucleotides
ECD_03875: ECD_03875 - endonuclease V; deoxyinosine 3, at 4,106,842 to 4,107,513
_03875
ECD_03876: ECD_03876 - DUF416 domain protein, at 4,107,556 to 4,108,146
_03876
ECD_03877: ECD_03877 - HU, DNA-binding transcriptional regulator, alpha subunit, at 4,108,333 to 4,108,605
_03877
ECD_03878: ECD_03878 - DUF1481 family putative lipoprotein, at 4,108,618 to 4,109,313
_03878
ECD_03879: ECD_03879 - Zn-dependent periplasmic chaperone, at 4,109,315 to 4,109,734
_03879
Position (kb)
4108
4109 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 4107.408 kb on - strand, within ECD_03875 at 4107.494 kb on - strand at 4107.494 kb on - strand at 4107.496 kb on - strand at 4107.511 kb on + strand at 4107.629 kb on + strand, within ECD_03876 at 4107.644 kb on - strand, within ECD_03876 at 4107.652 kb on + strand, within ECD_03876 at 4107.652 kb on + strand, within ECD_03876 at 4107.653 kb on - strand, within ECD_03876 at 4107.653 kb on - strand, within ECD_03876 at 4107.915 kb on + strand, within ECD_03876 at 4107.916 kb on - strand, within ECD_03876 at 4107.916 kb on - strand, within ECD_03876 at 4107.916 kb on - strand, within ECD_03876 at 4108.005 kb on - strand, within ECD_03876 at 4108.005 kb on - strand, within ECD_03876 at 4108.035 kb on - strand, within ECD_03876 at 4108.046 kb on + strand, within ECD_03876 at 4108.046 kb on + strand, within ECD_03876 at 4108.122 kb on + strand at 4108.144 kb on + strand at 4108.144 kb on + strand at 4108.145 kb on - strand at 4108.164 kb on + strand at 4108.217 kb on - strand at 4108.217 kb on - strand at 4108.255 kb on + strand at 4108.255 kb on + strand at 4108.255 kb on + strand at 4108.256 kb on - strand at 4108.270 kb on + strand at 4108.300 kb on + strand at 4108.300 kb on + strand at 4108.301 kb on - strand at 4108.321 kb on + strand at 4108.321 kb on + strand at 4108.322 kb on - strand at 4108.327 kb on + strand at 4108.327 kb on + strand at 4108.332 kb on + strand at 4108.332 kb on + strand at 4108.332 kb on + strand at 4108.332 kb on + strand at 4108.332 kb on + strand at 4108.332 kb on + strand at 4108.332 kb on + strand at 4108.333 kb on - strand at 4108.358 kb on + strand at 4108.428 kb on + strand, within ECD_03877 at 4108.457 kb on + strand, within ECD_03877 at 4108.506 kb on + strand, within ECD_03877 at 4108.599 kb on + strand at 4108.599 kb on + strand at 4108.599 kb on + strand at 4108.599 kb on + strand at 4108.599 kb on + strand at 4108.600 kb on - strand at 4108.604 kb on - strand at 4108.604 kb on - strand at 4108.629 kb on + strand at 4108.738 kb on - strand, within ECD_03878 at 4108.966 kb on - strand, within ECD_03878 at 4108.966 kb on - strand, within ECD_03878 at 4109.021 kb on + strand, within ECD_03878 at 4109.021 kb on + strand, within ECD_03878 at 4109.022 kb on - strand, within ECD_03878 at 4109.022 kb on - strand, within ECD_03878 at 4109.023 kb on + strand, within ECD_03878 at 4109.056 kb on - strand, within ECD_03878 at 4109.066 kb on + strand, within ECD_03878 at 4109.067 kb on - strand, within ECD_03878 at 4109.255 kb on + strand at 4109.255 kb on + strand at 4109.256 kb on - strand at 4109.316 kb on + strand at 4109.316 kb on + strand at 4109.408 kb on - strand, within ECD_03879 at 4109.423 kb on + strand, within ECD_03879 at 4109.433 kb on - strand, within ECD_03879 at 4109.517 kb on + strand, within ECD_03879 at 4109.517 kb on + strand, within ECD_03879 at 4109.518 kb on - strand, within ECD_03879 at 4109.518 kb on - strand, within ECD_03879 at 4109.518 kb on - strand, within ECD_03879 at 4109.569 kb on - strand, within ECD_03879
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 4,107,408 - ECD_03875 0.84 +1.6 4,107,494 - +0.5 4,107,494 - +1.7 4,107,496 - -0.9 4,107,511 + +0.0 4,107,629 + ECD_03876 0.12 +1.1 4,107,644 - ECD_03876 0.15 +1.3 4,107,652 + ECD_03876 0.16 +0.7 4,107,652 + ECD_03876 0.16 -0.9 4,107,653 - ECD_03876 0.16 +1.1 4,107,653 - ECD_03876 0.16 +2.2 4,107,915 + ECD_03876 0.61 -0.6 4,107,916 - ECD_03876 0.61 +0.6 4,107,916 - ECD_03876 0.61 -1.2 4,107,916 - ECD_03876 0.61 -0.2 4,108,005 - ECD_03876 0.76 +1.4 4,108,005 - ECD_03876 0.76 +2.1 4,108,035 - ECD_03876 0.81 +1.1 4,108,046 + ECD_03876 0.83 -0.8 4,108,046 + ECD_03876 0.83 -2.3 4,108,122 + -3.2 4,108,144 + -2.3 4,108,144 + -2.8 4,108,145 - -2.3 4,108,164 + -2.9 4,108,217 - -3.3 4,108,217 - -2.5 4,108,255 + -2.2 4,108,255 + -3.3 4,108,255 + -0.4 4,108,256 - -3.8 4,108,270 + -5.4 4,108,300 + -3.6 4,108,300 + -4.7 4,108,301 - -3.4 4,108,321 + -4.1 4,108,321 + -3.6 4,108,322 - -3.3 4,108,327 + -2.1 4,108,327 + -3.8 4,108,332 + -4.2 4,108,332 + -4.6 4,108,332 + -4.2 4,108,332 + -4.3 4,108,332 + -4.4 4,108,332 + -1.7 4,108,332 + -3.2 4,108,333 - -4.9 4,108,358 + -3.7 4,108,428 + ECD_03877 0.35 -4.4 4,108,457 + ECD_03877 0.45 -1.7 4,108,506 + ECD_03877 0.63 -5.2 4,108,599 + -3.7 4,108,599 + -4.2 4,108,599 + -5.3 4,108,599 + -3.2 4,108,599 + -3.1 4,108,600 - -3.3 4,108,604 - -2.2 4,108,604 - -2.3 4,108,629 + -1.0 4,108,738 - ECD_03878 0.17 -0.5 4,108,966 - ECD_03878 0.50 -1.1 4,108,966 - ECD_03878 0.50 -3.1 4,109,021 + ECD_03878 0.58 +0.2 4,109,021 + ECD_03878 0.58 -2.2 4,109,022 - ECD_03878 0.58 -1.4 4,109,022 - ECD_03878 0.58 -0.5 4,109,023 + ECD_03878 0.58 +1.9 4,109,056 - ECD_03878 0.63 -1.1 4,109,066 + ECD_03878 0.64 -1.5 4,109,067 - ECD_03878 0.65 +1.2 4,109,255 + +1.6 4,109,255 + +0.9 4,109,256 - +0.8 4,109,316 + +0.8 4,109,316 + +1.0 4,109,408 - ECD_03879 0.22 +1.3 4,109,423 + ECD_03879 0.26 +0.9 4,109,433 - ECD_03879 0.28 -1.3 4,109,517 + ECD_03879 0.48 +1.3 4,109,517 + ECD_03879 0.48 -0.8 4,109,518 - ECD_03879 0.48 -2.0 4,109,518 - ECD_03879 0.48 +1.6 4,109,518 - ECD_03879 0.48 -0.3 4,109,569 - ECD_03879 0.60 +0.7
Or see this region's nucleotide sequence