Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03811 and ECD_03812 are separated by 22 nucleotides ECD_03812 and ECD_03813 are separated by 425 nucleotides ECD_03813 and ECD_03814 are separated by 84 nucleotides
ECD_03811: ECD_03811 - glycerol kinase, at 4,023,636 to 4,025,144
_03811
ECD_03812: ECD_03812 - glycerol facilitator, at 4,025,167 to 4,026,012
_03812
ECD_03813: ECD_03813 - FtsZ stabilizer, septal ring assembly factor, cell division stimulator, at 4,026,438 to 4,026,683
_03813
ECD_03814: ECD_03814 - ribonuclease E (RNase E) inhibitor protein, at 4,026,768 to 4,027,253
_03814
Position (kb)
4025
4026
4027 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4024.243 kb on + strand, within ECD_03811 at 4024.243 kb on + strand, within ECD_03811 at 4024.244 kb on - strand, within ECD_03811 at 4024.348 kb on + strand, within ECD_03811 at 4024.349 kb on - strand, within ECD_03811 at 4024.349 kb on - strand, within ECD_03811 at 4024.460 kb on + strand, within ECD_03811 at 4024.461 kb on - strand, within ECD_03811 at 4024.471 kb on + strand, within ECD_03811 at 4024.471 kb on + strand, within ECD_03811 at 4024.472 kb on - strand, within ECD_03811 at 4024.472 kb on - strand, within ECD_03811 at 4024.473 kb on + strand, within ECD_03811 at 4024.474 kb on - strand, within ECD_03811 at 4024.474 kb on - strand, within ECD_03811 at 4024.577 kb on + strand, within ECD_03811 at 4024.595 kb on - strand, within ECD_03811 at 4024.634 kb on + strand, within ECD_03811 at 4024.635 kb on - strand, within ECD_03811 at 4024.643 kb on + strand, within ECD_03811 at 4024.643 kb on + strand, within ECD_03811 at 4024.644 kb on - strand, within ECD_03811 at 4024.644 kb on - strand, within ECD_03811 at 4024.772 kb on + strand, within ECD_03811 at 4024.773 kb on - strand, within ECD_03811 at 4024.774 kb on + strand, within ECD_03811 at 4024.797 kb on + strand, within ECD_03811 at 4024.798 kb on - strand, within ECD_03811 at 4024.849 kb on + strand, within ECD_03811 at 4024.849 kb on + strand, within ECD_03811 at 4024.849 kb on + strand, within ECD_03811 at 4024.849 kb on + strand, within ECD_03811 at 4024.850 kb on - strand, within ECD_03811 at 4024.850 kb on - strand, within ECD_03811 at 4024.850 kb on - strand, within ECD_03811 at 4024.850 kb on - strand, within ECD_03811 at 4024.850 kb on - strand, within ECD_03811 at 4024.914 kb on - strand, within ECD_03811 at 4024.914 kb on - strand, within ECD_03811 at 4025.007 kb on + strand at 4025.008 kb on - strand at 4025.083 kb on - strand at 4025.148 kb on + strand at 4025.148 kb on + strand at 4025.149 kb on - strand at 4025.149 kb on - strand at 4025.165 kb on + strand at 4025.166 kb on - strand at 4025.166 kb on - strand at 4025.168 kb on + strand at 4025.168 kb on + strand at 4025.226 kb on + strand at 4025.275 kb on + strand, within ECD_03812 at 4025.276 kb on - strand, within ECD_03812 at 4025.276 kb on - strand, within ECD_03812 at 4025.276 kb on - strand, within ECD_03812 at 4025.293 kb on - strand, within ECD_03812 at 4025.319 kb on - strand, within ECD_03812 at 4025.319 kb on - strand, within ECD_03812 at 4025.433 kb on + strand, within ECD_03812 at 4025.433 kb on + strand, within ECD_03812 at 4025.433 kb on + strand, within ECD_03812 at 4025.433 kb on + strand, within ECD_03812 at 4025.433 kb on + strand, within ECD_03812 at 4025.433 kb on + strand, within ECD_03812 at 4025.433 kb on + strand, within ECD_03812 at 4025.434 kb on - strand, within ECD_03812 at 4025.434 kb on - strand, within ECD_03812 at 4025.495 kb on - strand, within ECD_03812 at 4025.600 kb on + strand, within ECD_03812 at 4025.605 kb on - strand, within ECD_03812 at 4025.687 kb on + strand, within ECD_03812 at 4025.690 kb on + strand, within ECD_03812 at 4025.799 kb on + strand, within ECD_03812 at 4025.812 kb on - strand, within ECD_03812 at 4025.843 kb on + strand, within ECD_03812 at 4025.844 kb on - strand, within ECD_03812 at 4025.844 kb on - strand, within ECD_03812 at 4026.031 kb on + strand at 4026.032 kb on - strand at 4026.032 kb on - strand at 4026.032 kb on - strand at 4026.043 kb on + strand at 4026.043 kb on + strand at 4026.043 kb on + strand at 4026.043 kb on + strand at 4026.044 kb on - strand at 4026.088 kb on + strand at 4026.088 kb on + strand at 4026.120 kb on + strand at 4026.175 kb on - strand at 4026.189 kb on + strand at 4026.255 kb on + strand at 4026.255 kb on + strand at 4026.256 kb on - strand at 4026.256 kb on - strand at 4026.256 kb on - strand at 4026.256 kb on - strand at 4026.293 kb on + strand at 4026.336 kb on + strand at 4026.336 kb on + strand at 4026.336 kb on + strand at 4026.337 kb on - strand at 4026.352 kb on + strand at 4026.353 kb on - strand at 4026.353 kb on - strand at 4026.369 kb on + strand at 4026.369 kb on + strand at 4026.373 kb on - strand at 4026.373 kb on - strand at 4026.437 kb on + strand at 4026.438 kb on - strand at 4026.481 kb on + strand, within ECD_03813 at 4026.685 kb on + strand at 4026.685 kb on + strand at 4026.712 kb on + strand at 4026.712 kb on + strand at 4026.719 kb on + strand at 4026.719 kb on + strand at 4026.820 kb on + strand, within ECD_03814 at 4026.958 kb on - strand, within ECD_03814 at 4026.958 kb on - strand, within ECD_03814 at 4026.958 kb on - strand, within ECD_03814
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 4,024,243 + ECD_03811 0.40 -0.3 4,024,243 + ECD_03811 0.40 +1.9 4,024,244 - ECD_03811 0.40 +0.3 4,024,348 + ECD_03811 0.47 -1.2 4,024,349 - ECD_03811 0.47 -1.5 4,024,349 - ECD_03811 0.47 +0.0 4,024,460 + ECD_03811 0.55 -2.4 4,024,461 - ECD_03811 0.55 +1.2 4,024,471 + ECD_03811 0.55 +1.2 4,024,471 + ECD_03811 0.55 +1.1 4,024,472 - ECD_03811 0.55 -1.5 4,024,472 - ECD_03811 0.55 -2.3 4,024,473 + ECD_03811 0.55 -0.1 4,024,474 - ECD_03811 0.56 -0.9 4,024,474 - ECD_03811 0.56 +0.6 4,024,577 + ECD_03811 0.62 -2.0 4,024,595 - ECD_03811 0.64 +1.6 4,024,634 + ECD_03811 0.66 +0.1 4,024,635 - ECD_03811 0.66 +0.5 4,024,643 + ECD_03811 0.67 -1.5 4,024,643 + ECD_03811 0.67 -1.6 4,024,644 - ECD_03811 0.67 +1.4 4,024,644 - ECD_03811 0.67 -3.1 4,024,772 + ECD_03811 0.75 -1.4 4,024,773 - ECD_03811 0.75 -0.9 4,024,774 + ECD_03811 0.75 -0.6 4,024,797 + ECD_03811 0.77 +0.1 4,024,798 - ECD_03811 0.77 -1.5 4,024,849 + ECD_03811 0.80 -4.1 4,024,849 + ECD_03811 0.80 -0.3 4,024,849 + ECD_03811 0.80 -0.1 4,024,849 + ECD_03811 0.80 +0.5 4,024,850 - ECD_03811 0.80 -2.2 4,024,850 - ECD_03811 0.80 -0.2 4,024,850 - ECD_03811 0.80 -0.8 4,024,850 - ECD_03811 0.80 -1.6 4,024,850 - ECD_03811 0.80 -3.2 4,024,914 - ECD_03811 0.85 -0.2 4,024,914 - ECD_03811 0.85 -2.5 4,025,007 + +1.3 4,025,008 - +0.3 4,025,083 - -1.3 4,025,148 + -1.5 4,025,148 + +0.4 4,025,149 - -0.2 4,025,149 - +0.6 4,025,165 + +0.9 4,025,166 - -0.2 4,025,166 - +1.6 4,025,168 + +0.9 4,025,168 + +0.2 4,025,226 + -1.7 4,025,275 + ECD_03812 0.13 -1.9 4,025,276 - ECD_03812 0.13 +0.6 4,025,276 - ECD_03812 0.13 -0.2 4,025,276 - ECD_03812 0.13 -0.8 4,025,293 - ECD_03812 0.15 +0.5 4,025,319 - ECD_03812 0.18 -0.1 4,025,319 - ECD_03812 0.18 +0.7 4,025,433 + ECD_03812 0.31 -1.3 4,025,433 + ECD_03812 0.31 -2.2 4,025,433 + ECD_03812 0.31 -1.4 4,025,433 + ECD_03812 0.31 -1.2 4,025,433 + ECD_03812 0.31 +0.4 4,025,433 + ECD_03812 0.31 +0.1 4,025,433 + ECD_03812 0.31 +1.3 4,025,434 - ECD_03812 0.32 -0.6 4,025,434 - ECD_03812 0.32 +1.2 4,025,495 - ECD_03812 0.39 -0.4 4,025,600 + ECD_03812 0.51 +1.6 4,025,605 - ECD_03812 0.52 +1.0 4,025,687 + ECD_03812 0.61 -0.1 4,025,690 + ECD_03812 0.62 +0.5 4,025,799 + ECD_03812 0.75 +1.6 4,025,812 - ECD_03812 0.76 -0.2 4,025,843 + ECD_03812 0.80 -1.3 4,025,844 - ECD_03812 0.80 +0.2 4,025,844 - ECD_03812 0.80 +1.3 4,026,031 + +2.4 4,026,032 - -0.1 4,026,032 - +0.6 4,026,032 - +1.2 4,026,043 + -0.4 4,026,043 + -2.3 4,026,043 + +2.1 4,026,043 + +0.8 4,026,044 - +0.3 4,026,088 + -0.2 4,026,088 + +0.1 4,026,120 + +0.3 4,026,175 - -2.9 4,026,189 + -2.0 4,026,255 + +0.7 4,026,255 + +1.7 4,026,256 - -1.0 4,026,256 - -2.1 4,026,256 - +0.1 4,026,256 - +1.4 4,026,293 + +0.5 4,026,336 + +0.5 4,026,336 + +0.4 4,026,336 + +0.5 4,026,337 - +0.7 4,026,352 + -0.4 4,026,353 - +1.7 4,026,353 - +1.0 4,026,369 + +0.4 4,026,369 + +1.1 4,026,373 - +1.2 4,026,373 - +2.2 4,026,437 + -3.4 4,026,438 - +0.1 4,026,481 + ECD_03813 0.17 +0.9 4,026,685 + -0.2 4,026,685 + -1.0 4,026,712 + +0.5 4,026,712 + -3.1 4,026,719 + -1.4 4,026,719 + +0.1 4,026,820 + ECD_03814 0.11 -0.8 4,026,958 - ECD_03814 0.39 -0.7 4,026,958 - ECD_03814 0.39 -0.7 4,026,958 - ECD_03814 0.39 -1.2
Or see this region's nucleotide sequence