Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03803 and ECD_03804 are separated by 54 nucleotides ECD_03804 and ECD_03805 are separated by 107 nucleotides ECD_03805 and ECD_03806 are separated by 100 nucleotides ECD_03806 and ECD_03807 are separated by 211 nucleotides
ECD_03803: ECD_03803 - CDP-diacylglycerol phosphotidylhydrolase, at 4,017,852 to 4,018,607
_03803
ECD_03804: ECD_03804 - triosephosphate isomerase, at 4,018,662 to 4,019,429
_03804
ECD_03805: ECD_03805 - DUF1454 family putative periplasmic protein, at 4,019,537 to 4,020,136
_03805
ECD_03806: ECD_03806 - DUF805 family putative inner membrane protein, at 4,020,237 to 4,020,677
_03806
ECD_03807: ECD_03807 - UPF0381 family protein, at 4,020,889 to 4,021,188
_03807
Position (kb)
4019
4020
4021 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4018.619 kb on - strand at 4018.619 kb on - strand at 4018.627 kb on + strand at 4018.628 kb on - strand at 4018.663 kb on + strand at 4018.663 kb on + strand at 4018.664 kb on - strand at 4018.664 kb on - strand at 4018.691 kb on + strand at 4019.128 kb on + strand, within ECD_03804 at 4019.349 kb on - strand, within ECD_03804 at 4019.416 kb on - strand at 4019.447 kb on - strand at 4019.449 kb on - strand at 4019.457 kb on - strand at 4019.502 kb on - strand at 4019.502 kb on - strand at 4019.567 kb on + strand at 4019.631 kb on + strand, within ECD_03805 at 4019.631 kb on + strand, within ECD_03805 at 4019.632 kb on - strand, within ECD_03805 at 4019.658 kb on + strand, within ECD_03805 at 4019.659 kb on - strand, within ECD_03805 at 4019.662 kb on - strand, within ECD_03805 at 4019.761 kb on - strand, within ECD_03805 at 4019.761 kb on - strand, within ECD_03805 at 4019.863 kb on + strand, within ECD_03805 at 4019.864 kb on - strand, within ECD_03805 at 4019.871 kb on + strand, within ECD_03805 at 4019.871 kb on + strand, within ECD_03805 at 4019.872 kb on - strand, within ECD_03805 at 4020.056 kb on - strand, within ECD_03805 at 4020.105 kb on - strand at 4020.121 kb on + strand at 4020.122 kb on - strand at 4020.143 kb on + strand at 4020.154 kb on - strand at 4020.177 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.235 kb on - strand at 4020.235 kb on - strand at 4020.235 kb on - strand at 4020.235 kb on - strand at 4020.244 kb on + strand at 4020.245 kb on - strand at 4020.245 kb on - strand at 4020.245 kb on - strand at 4020.245 kb on - strand at 4020.256 kb on + strand at 4020.694 kb on + strand at 4020.719 kb on + strand at 4020.811 kb on + strand at 4020.812 kb on - strand at 4020.875 kb on + strand at 4020.875 kb on + strand at 4020.875 kb on + strand at 4020.876 kb on - strand at 4020.888 kb on + strand at 4020.902 kb on + strand at 4020.915 kb on + strand at 4020.919 kb on - strand, within ECD_03807 at 4020.966 kb on + strand, within ECD_03807 at 4020.966 kb on + strand, within ECD_03807 at 4020.967 kb on - strand, within ECD_03807 at 4021.081 kb on + strand, within ECD_03807 at 4021.082 kb on - strand, within ECD_03807 at 4021.084 kb on - strand, within ECD_03807
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 4,018,619 - +4.3 4,018,619 - -0.5 4,018,627 + -2.7 4,018,628 - -1.7 4,018,663 + +0.3 4,018,663 + -0.2 4,018,664 - -1.9 4,018,664 - -0.5 4,018,691 + +1.9 4,019,128 + ECD_03804 0.61 -0.1 4,019,349 - ECD_03804 0.89 +0.3 4,019,416 - -0.8 4,019,447 - +2.0 4,019,449 - +1.6 4,019,457 - -0.1 4,019,502 - -2.9 4,019,502 - -0.2 4,019,567 + +1.1 4,019,631 + ECD_03805 0.16 -0.0 4,019,631 + ECD_03805 0.16 +1.1 4,019,632 - ECD_03805 0.16 +0.8 4,019,658 + ECD_03805 0.20 -1.0 4,019,659 - ECD_03805 0.20 -0.6 4,019,662 - ECD_03805 0.21 +2.4 4,019,761 - ECD_03805 0.37 +0.9 4,019,761 - ECD_03805 0.37 -2.6 4,019,863 + ECD_03805 0.54 +1.3 4,019,864 - ECD_03805 0.55 +1.2 4,019,871 + ECD_03805 0.56 +0.1 4,019,871 + ECD_03805 0.56 -2.2 4,019,872 - ECD_03805 0.56 +0.6 4,020,056 - ECD_03805 0.86 -1.7 4,020,105 - +0.2 4,020,121 + +0.6 4,020,122 - +2.1 4,020,143 + +0.6 4,020,154 - -1.2 4,020,177 + +3.1 4,020,234 + +0.2 4,020,234 + -2.0 4,020,234 + -0.5 4,020,234 + -2.2 4,020,234 + +2.9 4,020,234 + +0.6 4,020,234 + -0.3 4,020,235 - -2.0 4,020,235 - +0.3 4,020,235 - -0.2 4,020,235 - +0.1 4,020,244 + -1.7 4,020,245 - +0.7 4,020,245 - +0.3 4,020,245 - -0.4 4,020,245 - -1.6 4,020,256 + -0.7 4,020,694 + -0.8 4,020,719 + +2.0 4,020,811 + -1.0 4,020,812 - +0.8 4,020,875 + +0.9 4,020,875 + -1.0 4,020,875 + +0.7 4,020,876 - -0.0 4,020,888 + -1.3 4,020,902 + -0.2 4,020,915 + -0.6 4,020,919 - ECD_03807 0.10 -1.9 4,020,966 + ECD_03807 0.26 +0.1 4,020,966 + ECD_03807 0.26 -1.5 4,020,967 - ECD_03807 0.26 -0.6 4,021,081 + ECD_03807 0.64 -0.4 4,021,082 - ECD_03807 0.64 -3.4 4,021,084 - ECD_03807 0.65 -2.7
Or see this region's nucleotide sequence