Strain Fitness in Escherichia coli BL21 around ECD_03805

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03803 and ECD_03804 are separated by 54 nucleotidesECD_03804 and ECD_03805 are separated by 107 nucleotidesECD_03805 and ECD_03806 are separated by 100 nucleotidesECD_03806 and ECD_03807 are separated by 211 nucleotides ECD_03803: ECD_03803 - CDP-diacylglycerol phosphotidylhydrolase, at 4,017,852 to 4,018,607 _03803 ECD_03804: ECD_03804 - triosephosphate isomerase, at 4,018,662 to 4,019,429 _03804 ECD_03805: ECD_03805 - DUF1454 family putative periplasmic protein, at 4,019,537 to 4,020,136 _03805 ECD_03806: ECD_03806 - DUF805 family putative inner membrane protein, at 4,020,237 to 4,020,677 _03806 ECD_03807: ECD_03807 - UPF0381 family protein, at 4,020,889 to 4,021,188 _03807 Position (kb) 4019 4020 4021Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4018.619 kb on - strandat 4018.619 kb on - strandat 4018.627 kb on + strandat 4018.628 kb on - strandat 4018.663 kb on + strandat 4018.663 kb on + strandat 4018.664 kb on - strandat 4018.664 kb on - strandat 4018.691 kb on + strandat 4019.128 kb on + strand, within ECD_03804at 4019.349 kb on - strand, within ECD_03804at 4019.416 kb on - strandat 4019.447 kb on - strandat 4019.449 kb on - strandat 4019.457 kb on - strandat 4019.502 kb on - strandat 4019.502 kb on - strandat 4019.567 kb on + strandat 4019.631 kb on + strand, within ECD_03805at 4019.631 kb on + strand, within ECD_03805at 4019.632 kb on - strand, within ECD_03805at 4019.658 kb on + strand, within ECD_03805at 4019.659 kb on - strand, within ECD_03805at 4019.662 kb on - strand, within ECD_03805at 4019.761 kb on - strand, within ECD_03805at 4019.761 kb on - strand, within ECD_03805at 4019.863 kb on + strand, within ECD_03805at 4019.864 kb on - strand, within ECD_03805at 4019.871 kb on + strand, within ECD_03805at 4019.871 kb on + strand, within ECD_03805at 4019.872 kb on - strand, within ECD_03805at 4020.056 kb on - strand, within ECD_03805at 4020.105 kb on - strandat 4020.121 kb on + strandat 4020.122 kb on - strandat 4020.143 kb on + strandat 4020.154 kb on - strandat 4020.177 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.235 kb on - strandat 4020.235 kb on - strandat 4020.235 kb on - strandat 4020.235 kb on - strandat 4020.244 kb on + strandat 4020.245 kb on - strandat 4020.245 kb on - strandat 4020.245 kb on - strandat 4020.245 kb on - strandat 4020.256 kb on + strandat 4020.694 kb on + strandat 4020.719 kb on + strandat 4020.811 kb on + strandat 4020.812 kb on - strandat 4020.875 kb on + strandat 4020.875 kb on + strandat 4020.875 kb on + strandat 4020.876 kb on - strandat 4020.888 kb on + strandat 4020.902 kb on + strandat 4020.915 kb on + strandat 4020.919 kb on - strand, within ECD_03807at 4020.966 kb on + strand, within ECD_03807at 4020.966 kb on + strand, within ECD_03807at 4020.967 kb on - strand, within ECD_03807at 4021.081 kb on + strand, within ECD_03807at 4021.082 kb on - strand, within ECD_03807at 4021.084 kb on - strand, within ECD_03807

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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4,018,619 - +4.3
4,018,619 - -0.5
4,018,627 + -2.7
4,018,628 - -1.7
4,018,663 + +0.3
4,018,663 + -0.2
4,018,664 - -1.9
4,018,664 - -0.5
4,018,691 + +1.9
4,019,128 + ECD_03804 0.61 -0.1
4,019,349 - ECD_03804 0.89 +0.3
4,019,416 - -0.8
4,019,447 - +2.0
4,019,449 - +1.6
4,019,457 - -0.1
4,019,502 - -2.9
4,019,502 - -0.2
4,019,567 + +1.1
4,019,631 + ECD_03805 0.16 -0.0
4,019,631 + ECD_03805 0.16 +1.1
4,019,632 - ECD_03805 0.16 +0.8
4,019,658 + ECD_03805 0.20 -1.0
4,019,659 - ECD_03805 0.20 -0.6
4,019,662 - ECD_03805 0.21 +2.4
4,019,761 - ECD_03805 0.37 +0.9
4,019,761 - ECD_03805 0.37 -2.6
4,019,863 + ECD_03805 0.54 +1.3
4,019,864 - ECD_03805 0.55 +1.2
4,019,871 + ECD_03805 0.56 +0.1
4,019,871 + ECD_03805 0.56 -2.2
4,019,872 - ECD_03805 0.56 +0.6
4,020,056 - ECD_03805 0.86 -1.7
4,020,105 - +0.2
4,020,121 + +0.6
4,020,122 - +2.1
4,020,143 + +0.6
4,020,154 - -1.2
4,020,177 + +3.1
4,020,234 + +0.2
4,020,234 + -2.0
4,020,234 + -0.5
4,020,234 + -2.2
4,020,234 + +2.9
4,020,234 + +0.6
4,020,234 + -0.3
4,020,235 - -2.0
4,020,235 - +0.3
4,020,235 - -0.2
4,020,235 - +0.1
4,020,244 + -1.7
4,020,245 - +0.7
4,020,245 - +0.3
4,020,245 - -0.4
4,020,245 - -1.6
4,020,256 + -0.7
4,020,694 + -0.8
4,020,719 + +2.0
4,020,811 + -1.0
4,020,812 - +0.8
4,020,875 + +0.9
4,020,875 + -1.0
4,020,875 + +0.7
4,020,876 - -0.0
4,020,888 + -1.3
4,020,902 + -0.2
4,020,915 + -0.6
4,020,919 - ECD_03807 0.10 -1.9
4,020,966 + ECD_03807 0.26 +0.1
4,020,966 + ECD_03807 0.26 -1.5
4,020,967 - ECD_03807 0.26 -0.6
4,021,081 + ECD_03807 0.64 -0.4
4,021,082 - ECD_03807 0.64 -3.4
4,021,084 - ECD_03807 0.65 -2.7

Or see this region's nucleotide sequence