Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03721 and ECD_03722 are separated by 24 nucleotides ECD_03722 and ECD_03723 overlap by 11 nucleotides
ECD_03721: ECD_03721 - hypothetical protein, at 3,920,614 to 3,921,588
_03721
ECD_03722: ECD_03722 - hypothetical protein, at 3,921,613 to 3,922,242
_03722
ECD_03723: ECD_03723 - hypothetical protein, at 3,922,232 to 3,923,236
_03723
Position (kb)
3921
3922
3923 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.708 kb on + strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.709 kb on - strand at 3920.952 kb on + strand, within ECD_03721 at 3920.952 kb on + strand, within ECD_03721 at 3920.953 kb on - strand, within ECD_03721 at 3920.968 kb on + strand, within ECD_03721 at 3921.007 kb on - strand, within ECD_03721 at 3921.094 kb on - strand, within ECD_03721 at 3921.094 kb on - strand, within ECD_03721 at 3921.111 kb on + strand, within ECD_03721 at 3921.122 kb on - strand, within ECD_03721 at 3921.153 kb on + strand, within ECD_03721 at 3921.164 kb on + strand, within ECD_03721 at 3921.164 kb on + strand, within ECD_03721 at 3921.164 kb on + strand, within ECD_03721 at 3921.165 kb on - strand, within ECD_03721 at 3921.165 kb on - strand, within ECD_03721 at 3921.165 kb on - strand, within ECD_03721 at 3921.165 kb on - strand, within ECD_03721 at 3921.168 kb on + strand, within ECD_03721 at 3921.168 kb on + strand, within ECD_03721 at 3921.168 kb on + strand, within ECD_03721 at 3921.168 kb on + strand, within ECD_03721 at 3921.169 kb on - strand, within ECD_03721 at 3921.169 kb on - strand, within ECD_03721 at 3921.169 kb on - strand, within ECD_03721 at 3921.169 kb on - strand, within ECD_03721 at 3921.217 kb on + strand, within ECD_03721 at 3921.372 kb on + strand, within ECD_03721 at 3921.462 kb on - strand, within ECD_03721 at 3921.545 kb on - strand at 3921.574 kb on - strand at 3921.695 kb on + strand, within ECD_03722 at 3921.696 kb on - strand, within ECD_03722 at 3921.697 kb on + strand, within ECD_03722 at 3921.697 kb on + strand, within ECD_03722 at 3921.697 kb on + strand, within ECD_03722 at 3921.697 kb on + strand, within ECD_03722 at 3921.698 kb on - strand, within ECD_03722 at 3921.867 kb on + strand, within ECD_03722 at 3921.867 kb on + strand, within ECD_03722 at 3921.868 kb on - strand, within ECD_03722 at 3921.926 kb on + strand, within ECD_03722 at 3921.926 kb on + strand, within ECD_03722 at 3921.926 kb on + strand, within ECD_03722 at 3921.926 kb on + strand, within ECD_03722 at 3921.926 kb on + strand, within ECD_03722 at 3921.926 kb on + strand, within ECD_03722 at 3921.926 kb on + strand, within ECD_03722 at 3921.927 kb on - strand, within ECD_03722 at 3921.927 kb on - strand, within ECD_03722 at 3921.927 kb on - strand, within ECD_03722 at 3921.927 kb on - strand, within ECD_03722 at 3921.927 kb on - strand, within ECD_03722 at 3921.927 kb on - strand, within ECD_03722 at 3921.930 kb on + strand, within ECD_03722 at 3921.930 kb on + strand, within ECD_03722 at 3921.930 kb on + strand, within ECD_03722 at 3921.931 kb on - strand, within ECD_03722 at 3921.931 kb on - strand, within ECD_03722 at 3922.090 kb on - strand, within ECD_03722 at 3922.090 kb on - strand, within ECD_03722 at 3922.116 kb on + strand, within ECD_03722 at 3922.195 kb on + strand at 3922.231 kb on - strand at 3922.246 kb on + strand at 3922.246 kb on + strand at 3922.247 kb on - strand at 3922.247 kb on - strand at 3922.247 kb on - strand at 3922.247 kb on - strand at 3922.247 kb on - strand at 3922.299 kb on - strand at 3922.331 kb on + strand at 3922.331 kb on + strand at 3922.332 kb on - strand at 3922.424 kb on + strand, within ECD_03723 at 3922.425 kb on - strand, within ECD_03723 at 3922.434 kb on - strand, within ECD_03723 at 3922.457 kb on + strand, within ECD_03723 at 3922.457 kb on + strand, within ECD_03723 at 3922.458 kb on - strand, within ECD_03723 at 3922.458 kb on - strand, within ECD_03723 at 3922.458 kb on - strand, within ECD_03723 at 3922.458 kb on - strand, within ECD_03723 at 3922.469 kb on + strand, within ECD_03723 at 3922.469 kb on + strand, within ECD_03723 at 3922.470 kb on - strand, within ECD_03723 at 3922.489 kb on - strand, within ECD_03723 at 3922.489 kb on - strand, within ECD_03723 at 3922.510 kb on + strand, within ECD_03723 at 3922.510 kb on + strand, within ECD_03723 at 3922.510 kb on + strand, within ECD_03723 at 3922.516 kb on + strand, within ECD_03723 at 3922.517 kb on - strand, within ECD_03723 at 3922.679 kb on + strand, within ECD_03723 at 3922.730 kb on + strand, within ECD_03723 at 3922.763 kb on + strand, within ECD_03723 at 3922.819 kb on + strand, within ECD_03723 at 3922.877 kb on - strand, within ECD_03723 at 3922.970 kb on + strand, within ECD_03723 at 3922.974 kb on + strand, within ECD_03723 at 3922.974 kb on + strand, within ECD_03723 at 3922.974 kb on + strand, within ECD_03723 at 3922.974 kb on + strand, within ECD_03723 at 3922.974 kb on + strand, within ECD_03723 at 3922.974 kb on + strand, within ECD_03723 at 3922.975 kb on - strand, within ECD_03723 at 3922.975 kb on - strand, within ECD_03723 at 3922.975 kb on - strand, within ECD_03723 at 3922.975 kb on - strand, within ECD_03723 at 3923.115 kb on - strand, within ECD_03723 at 3923.216 kb on - strand at 3923.216 kb on - strand at 3923.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 3,920,708 + -2.4 3,920,708 + -0.4 3,920,708 + -0.4 3,920,708 + +0.5 3,920,708 + +1.0 3,920,708 + +3.5 3,920,708 + -2.0 3,920,708 + -2.0 3,920,708 + -0.4 3,920,708 + -0.5 3,920,708 + +0.6 3,920,708 + +1.1 3,920,709 - -0.8 3,920,709 - -1.5 3,920,709 - -0.2 3,920,709 - -0.5 3,920,709 - +1.3 3,920,709 - -1.1 3,920,709 - -0.6 3,920,709 - +0.1 3,920,709 - +0.9 3,920,709 - -0.5 3,920,952 + ECD_03721 0.35 +0.4 3,920,952 + ECD_03721 0.35 -0.4 3,920,953 - ECD_03721 0.35 +1.2 3,920,968 + ECD_03721 0.36 -0.3 3,921,007 - ECD_03721 0.40 -2.9 3,921,094 - ECD_03721 0.49 -2.9 3,921,094 - ECD_03721 0.49 -0.2 3,921,111 + ECD_03721 0.51 -0.8 3,921,122 - ECD_03721 0.52 -0.5 3,921,153 + ECD_03721 0.55 +0.3 3,921,164 + ECD_03721 0.56 -0.5 3,921,164 + ECD_03721 0.56 +0.1 3,921,164 + ECD_03721 0.56 +2.1 3,921,165 - ECD_03721 0.57 +0.5 3,921,165 - ECD_03721 0.57 +0.8 3,921,165 - ECD_03721 0.57 -0.9 3,921,165 - ECD_03721 0.57 -0.6 3,921,168 + ECD_03721 0.57 +0.5 3,921,168 + ECD_03721 0.57 -0.4 3,921,168 + ECD_03721 0.57 +0.1 3,921,168 + ECD_03721 0.57 -1.2 3,921,169 - ECD_03721 0.57 +1.0 3,921,169 - ECD_03721 0.57 +0.4 3,921,169 - ECD_03721 0.57 -0.2 3,921,169 - ECD_03721 0.57 -0.9 3,921,217 + ECD_03721 0.62 -1.1 3,921,372 + ECD_03721 0.78 +0.2 3,921,462 - ECD_03721 0.87 +0.5 3,921,545 - +1.2 3,921,574 - -0.1 3,921,695 + ECD_03722 0.13 +0.8 3,921,696 - ECD_03722 0.13 +0.3 3,921,697 + ECD_03722 0.13 -2.4 3,921,697 + ECD_03722 0.13 +0.1 3,921,697 + ECD_03722 0.13 -2.1 3,921,697 + ECD_03722 0.13 +0.3 3,921,698 - ECD_03722 0.13 -2.9 3,921,867 + ECD_03722 0.40 +1.0 3,921,867 + ECD_03722 0.40 +1.3 3,921,868 - ECD_03722 0.40 +0.1 3,921,926 + ECD_03722 0.50 +1.2 3,921,926 + ECD_03722 0.50 +0.2 3,921,926 + ECD_03722 0.50 -0.3 3,921,926 + ECD_03722 0.50 +0.4 3,921,926 + ECD_03722 0.50 +0.4 3,921,926 + ECD_03722 0.50 -0.2 3,921,926 + ECD_03722 0.50 +0.2 3,921,927 - ECD_03722 0.50 -0.0 3,921,927 - ECD_03722 0.50 +0.7 3,921,927 - ECD_03722 0.50 -0.6 3,921,927 - ECD_03722 0.50 +0.7 3,921,927 - ECD_03722 0.50 +1.0 3,921,927 - ECD_03722 0.50 +0.3 3,921,930 + ECD_03722 0.50 -0.6 3,921,930 + ECD_03722 0.50 -0.1 3,921,930 + ECD_03722 0.50 +0.8 3,921,931 - ECD_03722 0.50 -1.7 3,921,931 - ECD_03722 0.50 -2.1 3,922,090 - ECD_03722 0.76 -0.2 3,922,090 - ECD_03722 0.76 +1.1 3,922,116 + ECD_03722 0.80 +1.0 3,922,195 + -0.7 3,922,231 - +0.8 3,922,246 + +0.5 3,922,246 + +0.7 3,922,247 - -0.0 3,922,247 - +1.4 3,922,247 - -1.3 3,922,247 - +0.5 3,922,247 - -1.1 3,922,299 - +0.5 3,922,331 + -1.3 3,922,331 + -2.5 3,922,332 - -2.2 3,922,424 + ECD_03723 0.19 -0.6 3,922,425 - ECD_03723 0.19 +0.1 3,922,434 - ECD_03723 0.20 -0.2 3,922,457 + ECD_03723 0.22 -1.5 3,922,457 + ECD_03723 0.22 +0.1 3,922,458 - ECD_03723 0.22 -1.2 3,922,458 - ECD_03723 0.22 -0.1 3,922,458 - ECD_03723 0.22 +0.3 3,922,458 - ECD_03723 0.22 -0.7 3,922,469 + ECD_03723 0.24 -3.2 3,922,469 + ECD_03723 0.24 -1.0 3,922,470 - ECD_03723 0.24 +0.5 3,922,489 - ECD_03723 0.26 +1.0 3,922,489 - ECD_03723 0.26 +0.6 3,922,510 + ECD_03723 0.28 -1.0 3,922,510 + ECD_03723 0.28 +1.7 3,922,510 + ECD_03723 0.28 -0.7 3,922,516 + ECD_03723 0.28 -0.7 3,922,517 - ECD_03723 0.28 +0.4 3,922,679 + ECD_03723 0.44 -0.7 3,922,730 + ECD_03723 0.50 +0.8 3,922,763 + ECD_03723 0.53 -0.2 3,922,819 + ECD_03723 0.58 +0.3 3,922,877 - ECD_03723 0.64 +1.2 3,922,970 + ECD_03723 0.73 +0.9 3,922,974 + ECD_03723 0.74 +1.4 3,922,974 + ECD_03723 0.74 -2.3 3,922,974 + ECD_03723 0.74 +1.4 3,922,974 + ECD_03723 0.74 -0.6 3,922,974 + ECD_03723 0.74 +1.0 3,922,974 + ECD_03723 0.74 +1.0 3,922,975 - ECD_03723 0.74 +1.5 3,922,975 - ECD_03723 0.74 -0.4 3,922,975 - ECD_03723 0.74 +1.0 3,922,975 - ECD_03723 0.74 -0.9 3,923,115 - ECD_03723 0.88 +0.3 3,923,216 - +0.1 3,923,216 - -1.5 3,923,238 - +1.2
Or see this region's nucleotide sequence