Strain Fitness in Escherichia coli BL21 around ECD_03651

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03650 and ECD_03651 are separated by 51 nucleotidesECD_03651 and ECD_03652 are separated by 149 nucleotides ECD_03650: ECD_03650 - l-threonine dehydratase, biosynthetic; also known as threonine deaminase, at 3,845,573 to 3,847,117 _03650 ECD_03651: ECD_03651 - transcriptional activator of ilvC; autorepressor, at 3,847,169 to 3,848,062 _03651 ECD_03652: ECD_03652 - ketol-acid reductoisomerase, NAD(P)-binding, at 3,848,212 to 3,849,687 _03652 Position (kb) 3847 3848 3849Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3846.276 kb on + strand, within ECD_03650at 3846.303 kb on + strand, within ECD_03650at 3846.334 kb on - strand, within ECD_03650at 3846.344 kb on + strand, within ECD_03650at 3846.403 kb on - strand, within ECD_03650at 3846.468 kb on - strand, within ECD_03650at 3846.508 kb on + strand, within ECD_03650at 3846.508 kb on + strand, within ECD_03650at 3846.677 kb on + strand, within ECD_03650at 3846.677 kb on + strand, within ECD_03650at 3846.678 kb on - strand, within ECD_03650at 3846.822 kb on + strand, within ECD_03650at 3846.823 kb on - strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.835 kb on + strand, within ECD_03650at 3846.835 kb on + strand, within ECD_03650at 3846.878 kb on + strand, within ECD_03650at 3846.937 kb on + strand, within ECD_03650at 3846.937 kb on + strand, within ECD_03650at 3846.941 kb on + strand, within ECD_03650at 3846.941 kb on + strand, within ECD_03650at 3846.941 kb on + strand, within ECD_03650at 3846.942 kb on - strand, within ECD_03650at 3846.942 kb on - strand, within ECD_03650at 3846.942 kb on - strand, within ECD_03650at 3847.062 kb on - strandat 3847.145 kb on - strandat 3847.480 kb on + strand, within ECD_03651at 3847.484 kb on - strand, within ECD_03651at 3847.566 kb on - strand, within ECD_03651at 3847.687 kb on + strand, within ECD_03651at 3847.687 kb on + strand, within ECD_03651at 3847.690 kb on + strand, within ECD_03651at 3847.690 kb on + strand, within ECD_03651at 3847.691 kb on - strand, within ECD_03651at 3847.691 kb on - strand, within ECD_03651at 3847.691 kb on - strand, within ECD_03651at 3847.697 kb on - strand, within ECD_03651at 3847.697 kb on - strand, within ECD_03651at 3847.755 kb on + strand, within ECD_03651at 3847.780 kb on + strand, within ECD_03651at 3847.781 kb on - strand, within ECD_03651at 3847.781 kb on - strand, within ECD_03651at 3847.781 kb on - strand, within ECD_03651at 3847.784 kb on + strand, within ECD_03651at 3847.784 kb on + strand, within ECD_03651at 3847.785 kb on - strand, within ECD_03651at 3847.785 kb on - strand, within ECD_03651at 3847.785 kb on - strand, within ECD_03651at 3848.146 kb on + strandat 3848.146 kb on + strandat 3848.146 kb on + strandat 3848.146 kb on + strandat 3848.147 kb on - strandat 3848.147 kb on - strandat 3848.147 kb on - strandat 3848.147 kb on - strandat 3848.147 kb on - strandat 3848.148 kb on + strandat 3848.149 kb on - strandat 3848.183 kb on + strandat 3848.183 kb on + strandat 3848.183 kb on + strandat 3848.217 kb on + strandat 3848.221 kb on + strandat 3848.229 kb on + strandat 3848.229 kb on + strandat 3848.311 kb on + strandat 3848.311 kb on + strandat 3848.404 kb on + strand, within ECD_03652at 3848.485 kb on + strand, within ECD_03652at 3848.552 kb on + strand, within ECD_03652at 3848.552 kb on + strand, within ECD_03652at 3848.643 kb on + strand, within ECD_03652at 3848.643 kb on + strand, within ECD_03652at 3848.649 kb on + strand, within ECD_03652at 3848.649 kb on + strand, within ECD_03652at 3848.704 kb on + strand, within ECD_03652at 3848.704 kb on + strand, within ECD_03652at 3848.705 kb on - strand, within ECD_03652at 3848.956 kb on + strand, within ECD_03652at 3848.956 kb on + strand, within ECD_03652

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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3,846,276 + ECD_03650 0.46 +0.5
3,846,303 + ECD_03650 0.47 -3.1
3,846,334 - ECD_03650 0.49 +0.7
3,846,344 + ECD_03650 0.50 -0.6
3,846,403 - ECD_03650 0.54 +1.2
3,846,468 - ECD_03650 0.58 +0.1
3,846,508 + ECD_03650 0.61 +1.1
3,846,508 + ECD_03650 0.61 +0.8
3,846,677 + ECD_03650 0.71 +0.8
3,846,677 + ECD_03650 0.71 -0.2
3,846,678 - ECD_03650 0.72 +1.6
3,846,822 + ECD_03650 0.81 -2.7
3,846,823 - ECD_03650 0.81 -1.3
3,846,833 + ECD_03650 0.82 -2.3
3,846,833 + ECD_03650 0.82 +0.6
3,846,833 + ECD_03650 0.82 -0.3
3,846,833 + ECD_03650 0.82 +0.5
3,846,833 + ECD_03650 0.82 +1.3
3,846,835 + ECD_03650 0.82 -2.1
3,846,835 + ECD_03650 0.82 +0.4
3,846,878 + ECD_03650 0.84 -1.5
3,846,937 + ECD_03650 0.88 -2.4
3,846,937 + ECD_03650 0.88 +0.3
3,846,941 + ECD_03650 0.89 -2.1
3,846,941 + ECD_03650 0.89 +1.2
3,846,941 + ECD_03650 0.89 -1.8
3,846,942 - ECD_03650 0.89 -1.3
3,846,942 - ECD_03650 0.89 -0.6
3,846,942 - ECD_03650 0.89 -0.8
3,847,062 - +0.1
3,847,145 - -2.3
3,847,480 + ECD_03651 0.35 -0.9
3,847,484 - ECD_03651 0.35 -0.1
3,847,566 - ECD_03651 0.44 +0.2
3,847,687 + ECD_03651 0.58 +1.2
3,847,687 + ECD_03651 0.58 -0.6
3,847,690 + ECD_03651 0.58 +0.4
3,847,690 + ECD_03651 0.58 +2.1
3,847,691 - ECD_03651 0.58 +0.4
3,847,691 - ECD_03651 0.58 -1.2
3,847,691 - ECD_03651 0.58 +1.0
3,847,697 - ECD_03651 0.59 +1.1
3,847,697 - ECD_03651 0.59 +3.1
3,847,755 + ECD_03651 0.66 -1.4
3,847,780 + ECD_03651 0.68 +0.2
3,847,781 - ECD_03651 0.68 +0.3
3,847,781 - ECD_03651 0.68 +0.2
3,847,781 - ECD_03651 0.68 -0.2
3,847,784 + ECD_03651 0.69 -2.1
3,847,784 + ECD_03651 0.69 +0.8
3,847,785 - ECD_03651 0.69 -0.0
3,847,785 - ECD_03651 0.69 +0.3
3,847,785 - ECD_03651 0.69 +1.2
3,848,146 + -1.6
3,848,146 + -0.7
3,848,146 + +0.9
3,848,146 + +1.0
3,848,147 - -2.6
3,848,147 - -0.5
3,848,147 - -0.3
3,848,147 - +0.5
3,848,147 - +1.0
3,848,148 + +1.0
3,848,149 - +1.9
3,848,183 + +0.4
3,848,183 + +0.5
3,848,183 + -0.4
3,848,217 + -0.1
3,848,221 + +0.4
3,848,229 + -0.6
3,848,229 + -0.9
3,848,311 + -0.5
3,848,311 + -0.5
3,848,404 + ECD_03652 0.13 -1.2
3,848,485 + ECD_03652 0.18 -1.2
3,848,552 + ECD_03652 0.23 -0.0
3,848,552 + ECD_03652 0.23 -1.0
3,848,643 + ECD_03652 0.29 +1.0
3,848,643 + ECD_03652 0.29 +0.1
3,848,649 + ECD_03652 0.30 -2.1
3,848,649 + ECD_03652 0.30 -0.4
3,848,704 + ECD_03652 0.33 +1.5
3,848,704 + ECD_03652 0.33 +1.4
3,848,705 - ECD_03652 0.33 +5.1
3,848,956 + ECD_03652 0.50 +0.5
3,848,956 + ECD_03652 0.50 -0.7

Or see this region's nucleotide sequence