Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03650 and ECD_03651 are separated by 51 nucleotides ECD_03651 and ECD_03652 are separated by 149 nucleotides
ECD_03650: ECD_03650 - l-threonine dehydratase, biosynthetic; also known as threonine deaminase, at 3,845,573 to 3,847,117
_03650
ECD_03651: ECD_03651 - transcriptional activator of ilvC; autorepressor, at 3,847,169 to 3,848,062
_03651
ECD_03652: ECD_03652 - ketol-acid reductoisomerase, NAD(P)-binding, at 3,848,212 to 3,849,687
_03652
Position (kb)
3847
3848
3849 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3846.276 kb on + strand, within ECD_03650 at 3846.303 kb on + strand, within ECD_03650 at 3846.334 kb on - strand, within ECD_03650 at 3846.344 kb on + strand, within ECD_03650 at 3846.403 kb on - strand, within ECD_03650 at 3846.468 kb on - strand, within ECD_03650 at 3846.508 kb on + strand, within ECD_03650 at 3846.508 kb on + strand, within ECD_03650 at 3846.677 kb on + strand, within ECD_03650 at 3846.677 kb on + strand, within ECD_03650 at 3846.678 kb on - strand, within ECD_03650 at 3846.822 kb on + strand, within ECD_03650 at 3846.823 kb on - strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.833 kb on + strand, within ECD_03650 at 3846.835 kb on + strand, within ECD_03650 at 3846.835 kb on + strand, within ECD_03650 at 3846.878 kb on + strand, within ECD_03650 at 3846.937 kb on + strand, within ECD_03650 at 3846.937 kb on + strand, within ECD_03650 at 3846.941 kb on + strand, within ECD_03650 at 3846.941 kb on + strand, within ECD_03650 at 3846.941 kb on + strand, within ECD_03650 at 3846.942 kb on - strand, within ECD_03650 at 3846.942 kb on - strand, within ECD_03650 at 3846.942 kb on - strand, within ECD_03650 at 3847.062 kb on - strand at 3847.145 kb on - strand at 3847.480 kb on + strand, within ECD_03651 at 3847.484 kb on - strand, within ECD_03651 at 3847.566 kb on - strand, within ECD_03651 at 3847.687 kb on + strand, within ECD_03651 at 3847.687 kb on + strand, within ECD_03651 at 3847.690 kb on + strand, within ECD_03651 at 3847.690 kb on + strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.697 kb on - strand, within ECD_03651 at 3847.697 kb on - strand, within ECD_03651 at 3847.755 kb on + strand, within ECD_03651 at 3847.780 kb on + strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.784 kb on + strand, within ECD_03651 at 3847.784 kb on + strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651 at 3848.146 kb on + strand at 3848.146 kb on + strand at 3848.146 kb on + strand at 3848.146 kb on + strand at 3848.147 kb on - strand at 3848.147 kb on - strand at 3848.147 kb on - strand at 3848.147 kb on - strand at 3848.147 kb on - strand at 3848.148 kb on + strand at 3848.149 kb on - strand at 3848.183 kb on + strand at 3848.183 kb on + strand at 3848.183 kb on + strand at 3848.217 kb on + strand at 3848.221 kb on + strand at 3848.229 kb on + strand at 3848.229 kb on + strand at 3848.311 kb on + strand at 3848.311 kb on + strand at 3848.404 kb on + strand, within ECD_03652 at 3848.485 kb on + strand, within ECD_03652 at 3848.552 kb on + strand, within ECD_03652 at 3848.552 kb on + strand, within ECD_03652 at 3848.643 kb on + strand, within ECD_03652 at 3848.643 kb on + strand, within ECD_03652 at 3848.649 kb on + strand, within ECD_03652 at 3848.649 kb on + strand, within ECD_03652 at 3848.704 kb on + strand, within ECD_03652 at 3848.704 kb on + strand, within ECD_03652 at 3848.705 kb on - strand, within ECD_03652 at 3848.956 kb on + strand, within ECD_03652 at 3848.956 kb on + strand, within ECD_03652
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 3,846,276 + ECD_03650 0.46 +0.5 3,846,303 + ECD_03650 0.47 -3.1 3,846,334 - ECD_03650 0.49 +0.7 3,846,344 + ECD_03650 0.50 -0.6 3,846,403 - ECD_03650 0.54 +1.2 3,846,468 - ECD_03650 0.58 +0.1 3,846,508 + ECD_03650 0.61 +1.1 3,846,508 + ECD_03650 0.61 +0.8 3,846,677 + ECD_03650 0.71 +0.8 3,846,677 + ECD_03650 0.71 -0.2 3,846,678 - ECD_03650 0.72 +1.6 3,846,822 + ECD_03650 0.81 -2.7 3,846,823 - ECD_03650 0.81 -1.3 3,846,833 + ECD_03650 0.82 -2.3 3,846,833 + ECD_03650 0.82 +0.6 3,846,833 + ECD_03650 0.82 -0.3 3,846,833 + ECD_03650 0.82 +0.5 3,846,833 + ECD_03650 0.82 +1.3 3,846,835 + ECD_03650 0.82 -2.1 3,846,835 + ECD_03650 0.82 +0.4 3,846,878 + ECD_03650 0.84 -1.5 3,846,937 + ECD_03650 0.88 -2.4 3,846,937 + ECD_03650 0.88 +0.3 3,846,941 + ECD_03650 0.89 -2.1 3,846,941 + ECD_03650 0.89 +1.2 3,846,941 + ECD_03650 0.89 -1.8 3,846,942 - ECD_03650 0.89 -1.3 3,846,942 - ECD_03650 0.89 -0.6 3,846,942 - ECD_03650 0.89 -0.8 3,847,062 - +0.1 3,847,145 - -2.3 3,847,480 + ECD_03651 0.35 -0.9 3,847,484 - ECD_03651 0.35 -0.1 3,847,566 - ECD_03651 0.44 +0.2 3,847,687 + ECD_03651 0.58 +1.2 3,847,687 + ECD_03651 0.58 -0.6 3,847,690 + ECD_03651 0.58 +0.4 3,847,690 + ECD_03651 0.58 +2.1 3,847,691 - ECD_03651 0.58 +0.4 3,847,691 - ECD_03651 0.58 -1.2 3,847,691 - ECD_03651 0.58 +1.0 3,847,697 - ECD_03651 0.59 +1.1 3,847,697 - ECD_03651 0.59 +3.1 3,847,755 + ECD_03651 0.66 -1.4 3,847,780 + ECD_03651 0.68 +0.2 3,847,781 - ECD_03651 0.68 +0.3 3,847,781 - ECD_03651 0.68 +0.2 3,847,781 - ECD_03651 0.68 -0.2 3,847,784 + ECD_03651 0.69 -2.1 3,847,784 + ECD_03651 0.69 +0.8 3,847,785 - ECD_03651 0.69 -0.0 3,847,785 - ECD_03651 0.69 +0.3 3,847,785 - ECD_03651 0.69 +1.2 3,848,146 + -1.6 3,848,146 + -0.7 3,848,146 + +0.9 3,848,146 + +1.0 3,848,147 - -2.6 3,848,147 - -0.5 3,848,147 - -0.3 3,848,147 - +0.5 3,848,147 - +1.0 3,848,148 + +1.0 3,848,149 - +1.9 3,848,183 + +0.4 3,848,183 + +0.5 3,848,183 + -0.4 3,848,217 + -0.1 3,848,221 + +0.4 3,848,229 + -0.6 3,848,229 + -0.9 3,848,311 + -0.5 3,848,311 + -0.5 3,848,404 + ECD_03652 0.13 -1.2 3,848,485 + ECD_03652 0.18 -1.2 3,848,552 + ECD_03652 0.23 -0.0 3,848,552 + ECD_03652 0.23 -1.0 3,848,643 + ECD_03652 0.29 +1.0 3,848,643 + ECD_03652 0.29 +0.1 3,848,649 + ECD_03652 0.30 -2.1 3,848,649 + ECD_03652 0.30 -0.4 3,848,704 + ECD_03652 0.33 +1.5 3,848,704 + ECD_03652 0.33 +1.4 3,848,705 - ECD_03652 0.33 +5.1 3,848,956 + ECD_03652 0.50 +0.5 3,848,956 + ECD_03652 0.50 -0.7
Or see this region's nucleotide sequence