Strain Fitness in Escherichia coli BL21 around ECD_03480

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03479 and ECD_03480 are separated by 45 nucleotidesECD_03480 and ECD_03481 are separated by 84 nucleotides ECD_03479: ECD_03479 - Lipid A-core, surface polymer ligase, at 3,665,008 to 3,666,261 _03479 ECD_03480: ECD_03480 - putative beta1,3-glucosyltransferase, at 3,666,307 to 3,667,290 _03480 ECD_03481: ECD_03481 - UDP-galactose:(Galactosyl) LPS alpha1,2-galactosyltransferase, at 3,667,375 to 3,668,400 _03481 Position (kb) 3666 3667 3668Strain fitness (log2 ratio) -2 -1 0 1at 3665.656 kb on + strand, within ECD_03479at 3665.657 kb on - strand, within ECD_03479at 3665.680 kb on - strand, within ECD_03479at 3665.786 kb on - strand, within ECD_03479at 3666.569 kb on - strand, within ECD_03480at 3666.670 kb on - strand, within ECD_03480at 3666.894 kb on - strand, within ECD_03480at 3666.991 kb on - strand, within ECD_03480at 3667.608 kb on - strand, within ECD_03481at 3667.800 kb on + strand, within ECD_03481

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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3,665,656 + ECD_03479 0.52 -1.2
3,665,657 - ECD_03479 0.52 +1.0
3,665,680 - ECD_03479 0.54 -0.6
3,665,786 - ECD_03479 0.62 -0.6
3,666,569 - ECD_03480 0.27 -1.0
3,666,670 - ECD_03480 0.37 -0.1
3,666,894 - ECD_03480 0.60 -2.2
3,666,991 - ECD_03480 0.70 -2.5
3,667,608 - ECD_03481 0.23 -1.1
3,667,800 + ECD_03481 0.41 +1.4

Or see this region's nucleotide sequence