Strain Fitness in Escherichia coli BL21 around ECD_03198

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03196 and ECD_03197 overlap by 1 nucleotidesECD_03197 and ECD_03198 are separated by 166 nucleotidesECD_03198 and ECD_03199 are separated by 220 nucleotidesECD_03199 and ECD_03200 are separated by 48 nucleotides ECD_03196: ECD_03196 - sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis, at 3,334,933 to 3,335,319 _03196 ECD_03197: ECD_03197 - putative PAS domain-containing DNA-binding transcriptional regulator, at 3,335,319 to 3,336,041 _03197 ECD_03198: ECD_03198 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase), at 3,336,208 to 3,337,020 _03198 ECD_03199: ECD_03199 - phi X174 lysis protein, at 3,337,241 to 3,337,459 _03199 ECD_03200: ECD_03200 - FKBP-type peptidyl prolyl cis-trans isomerase (rotamase), at 3,337,508 to 3,338,098 _03200 Position (kb) 3336 3337 3338Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3335.366 kb on - strandat 3335.372 kb on - strandat 3335.372 kb on - strandat 3335.372 kb on - strandat 3335.372 kb on - strandat 3335.427 kb on - strand, within ECD_03197at 3335.427 kb on - strand, within ECD_03197at 3335.671 kb on - strand, within ECD_03197at 3335.671 kb on - strand, within ECD_03197at 3335.671 kb on - strand, within ECD_03197at 3335.716 kb on - strand, within ECD_03197at 3335.719 kb on - strand, within ECD_03197at 3335.739 kb on - strand, within ECD_03197at 3335.751 kb on - strand, within ECD_03197at 3335.790 kb on - strand, within ECD_03197at 3335.790 kb on - strand, within ECD_03197at 3335.790 kb on - strand, within ECD_03197at 3335.794 kb on - strand, within ECD_03197at 3335.808 kb on - strand, within ECD_03197at 3335.808 kb on - strand, within ECD_03197at 3335.808 kb on - strand, within ECD_03197at 3335.835 kb on - strand, within ECD_03197at 3335.835 kb on - strand, within ECD_03197at 3335.835 kb on - strand, within ECD_03197at 3335.835 kb on - strand, within ECD_03197at 3336.152 kb on + strandat 3336.152 kb on + strandat 3336.202 kb on + strandat 3336.292 kb on + strand, within ECD_03198at 3336.367 kb on - strand, within ECD_03198at 3336.427 kb on - strand, within ECD_03198at 3336.467 kb on + strand, within ECD_03198at 3336.468 kb on - strand, within ECD_03198at 3336.468 kb on - strand, within ECD_03198at 3336.487 kb on - strand, within ECD_03198at 3336.509 kb on + strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.517 kb on + strand, within ECD_03198at 3336.518 kb on - strand, within ECD_03198at 3336.563 kb on - strand, within ECD_03198at 3336.563 kb on - strand, within ECD_03198at 3336.566 kb on - strand, within ECD_03198at 3336.630 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.872 kb on + strand, within ECD_03198at 3336.873 kb on - strand, within ECD_03198at 3336.924 kb on + strand, within ECD_03198at 3337.005 kb on + strandat 3337.006 kb on - strandat 3337.024 kb on + strandat 3337.025 kb on - strandat 3337.058 kb on - strandat 3337.058 kb on - strandat 3337.061 kb on + strandat 3337.061 kb on + strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.075 kb on + strandat 3337.075 kb on + strandat 3337.076 kb on - strandat 3337.076 kb on - strandat 3337.078 kb on + strandat 3337.078 kb on + strandat 3337.079 kb on - strandat 3337.079 kb on - strandat 3337.079 kb on - strandat 3337.081 kb on - strandat 3337.101 kb on + strandat 3337.121 kb on + strandat 3337.121 kb on + strandat 3337.121 kb on + strandat 3337.122 kb on - strandat 3337.154 kb on + strandat 3337.252 kb on - strandat 3337.395 kb on + strand, within ECD_03199at 3337.396 kb on - strand, within ECD_03199at 3337.454 kb on + strandat 3337.455 kb on - strandat 3337.736 kb on - strand, within ECD_03200at 3337.819 kb on + strand, within ECD_03200at 3337.823 kb on + strand, within ECD_03200at 3337.824 kb on - strand, within ECD_03200at 3337.824 kb on - strand, within ECD_03200at 3337.824 kb on - strand, within ECD_03200at 3337.847 kb on - strand, within ECD_03200at 3337.850 kb on + strand, within ECD_03200at 3337.850 kb on + strand, within ECD_03200at 3337.851 kb on - strand, within ECD_03200at 3337.858 kb on + strand, within ECD_03200at 3337.859 kb on - strand, within ECD_03200at 3337.887 kb on + strand, within ECD_03200at 3337.888 kb on - strand, within ECD_03200at 3337.999 kb on - strand, within ECD_03200

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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3,335,366 - +1.5
3,335,372 - +0.9
3,335,372 - +0.5
3,335,372 - +0.6
3,335,372 - +0.9
3,335,427 - ECD_03197 0.15 +1.6
3,335,427 - ECD_03197 0.15 +0.8
3,335,671 - ECD_03197 0.49 +1.1
3,335,671 - ECD_03197 0.49 +0.6
3,335,671 - ECD_03197 0.49 +1.9
3,335,716 - ECD_03197 0.55 +1.2
3,335,719 - ECD_03197 0.55 -0.0
3,335,739 - ECD_03197 0.58 +1.6
3,335,751 - ECD_03197 0.60 -2.2
3,335,790 - ECD_03197 0.65 +0.8
3,335,790 - ECD_03197 0.65 +2.3
3,335,790 - ECD_03197 0.65 -2.2
3,335,794 - ECD_03197 0.66 +1.3
3,335,808 - ECD_03197 0.68 -2.6
3,335,808 - ECD_03197 0.68 -1.5
3,335,808 - ECD_03197 0.68 -0.3
3,335,835 - ECD_03197 0.71 +2.5
3,335,835 - ECD_03197 0.71 +0.9
3,335,835 - ECD_03197 0.71 +1.5
3,335,835 - ECD_03197 0.71 +0.1
3,336,152 + +1.2
3,336,152 + +0.5
3,336,202 + +1.7
3,336,292 + ECD_03198 0.10 -0.1
3,336,367 - ECD_03198 0.20 -0.1
3,336,427 - ECD_03198 0.27 -1.7
3,336,467 + ECD_03198 0.32 +0.0
3,336,468 - ECD_03198 0.32 -1.2
3,336,468 - ECD_03198 0.32 -0.2
3,336,487 - ECD_03198 0.34 -0.0
3,336,509 + ECD_03198 0.37 -0.6
3,336,510 - ECD_03198 0.37 -0.0
3,336,510 - ECD_03198 0.37 -0.4
3,336,510 - ECD_03198 0.37 -3.1
3,336,517 + ECD_03198 0.38 +0.5
3,336,518 - ECD_03198 0.38 +0.4
3,336,563 - ECD_03198 0.44 -0.1
3,336,563 - ECD_03198 0.44 -1.8
3,336,566 - ECD_03198 0.44 -1.9
3,336,630 - ECD_03198 0.52 +0.9
3,336,846 - ECD_03198 0.78 +0.4
3,336,846 - ECD_03198 0.78 +0.3
3,336,846 - ECD_03198 0.78 +0.5
3,336,872 + ECD_03198 0.82 +1.3
3,336,873 - ECD_03198 0.82 -1.9
3,336,924 + ECD_03198 0.88 -1.2
3,337,005 + +0.7
3,337,006 - +0.9
3,337,024 + +0.6
3,337,025 - -0.7
3,337,058 - -1.2
3,337,058 - +1.0
3,337,061 + +0.7
3,337,061 + +0.2
3,337,062 - +0.7
3,337,062 - +0.1
3,337,062 - -1.5
3,337,062 - -2.9
3,337,062 - -0.5
3,337,062 - +0.8
3,337,075 + -0.2
3,337,075 + +1.5
3,337,076 - -1.0
3,337,076 - -2.7
3,337,078 + +1.4
3,337,078 + -1.5
3,337,079 - -0.4
3,337,079 - -0.4
3,337,079 - +0.2
3,337,081 - +0.7
3,337,101 + +0.6
3,337,121 + -0.3
3,337,121 + +0.6
3,337,121 + +0.1
3,337,122 - +0.1
3,337,154 + +0.8
3,337,252 - +0.1
3,337,395 + ECD_03199 0.70 +0.8
3,337,396 - ECD_03199 0.71 +0.4
3,337,454 + -0.0
3,337,455 - +1.2
3,337,736 - ECD_03200 0.39 +0.7
3,337,819 + ECD_03200 0.53 +0.8
3,337,823 + ECD_03200 0.53 -1.6
3,337,824 - ECD_03200 0.53 -0.2
3,337,824 - ECD_03200 0.53 -1.0
3,337,824 - ECD_03200 0.53 +1.2
3,337,847 - ECD_03200 0.57 -0.6
3,337,850 + ECD_03200 0.58 +1.6
3,337,850 + ECD_03200 0.58 -1.0
3,337,851 - ECD_03200 0.58 -0.3
3,337,858 + ECD_03200 0.59 +3.0
3,337,859 - ECD_03200 0.59 +0.2
3,337,887 + ECD_03200 0.64 +1.5
3,337,888 - ECD_03200 0.64 +0.9
3,337,999 - ECD_03200 0.83 +1.4

Or see this region's nucleotide sequence