Strain Fitness in Escherichia coli BL21 around ECD_03118

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03117 and ECD_03118 are separated by 328 nucleotidesECD_03118 and ECD_03119 are separated by 25 nucleotidesECD_03119 and ECD_03120 are separated by 85 nucleotides ECD_03117: ECD_03117 - methyltransferase for 50S ribosomal subunit protein L11, at 3,270,226 to 3,271,107 _03117 ECD_03118: ECD_03118 - tRNA-dihydrouridine synthase B, at 3,271,436 to 3,272,401 _03118 ECD_03119: ECD_03119 - global DNA-binding transcriptional dual regulator, at 3,272,427 to 3,272,723 _03119 ECD_03120: ECD_03120 - DNA adenine methyltransferase, SAM-dependent, at 3,272,809 to 3,273,693 _03120 Position (kb) 3271 3272 3273Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3270.495 kb on - strand, within ECD_03117at 3270.617 kb on + strand, within ECD_03117at 3270.618 kb on - strand, within ECD_03117at 3270.789 kb on + strand, within ECD_03117at 3270.823 kb on - strand, within ECD_03117at 3270.862 kb on + strand, within ECD_03117at 3270.862 kb on + strand, within ECD_03117at 3270.863 kb on - strand, within ECD_03117at 3270.863 kb on - strand, within ECD_03117at 3270.932 kb on + strand, within ECD_03117at 3270.933 kb on - strand, within ECD_03117at 3271.033 kb on + strandat 3271.099 kb on - strandat 3271.105 kb on + strandat 3271.105 kb on + strandat 3271.279 kb on + strandat 3271.301 kb on + strandat 3271.320 kb on + strandat 3271.392 kb on - strandat 3271.394 kb on + strandat 3271.396 kb on + strandat 3271.396 kb on + strandat 3271.417 kb on + strandat 3271.417 kb on + strandat 3271.417 kb on + strandat 3271.417 kb on + strandat 3271.418 kb on - strandat 3271.418 kb on - strandat 3271.430 kb on + strandat 3271.430 kb on + strandat 3271.451 kb on + strandat 3271.451 kb on + strandat 3271.452 kb on - strandat 3271.567 kb on + strand, within ECD_03118at 3271.687 kb on + strand, within ECD_03118at 3271.688 kb on - strand, within ECD_03118at 3271.882 kb on + strand, within ECD_03118at 3271.982 kb on + strand, within ECD_03118at 3271.990 kb on + strand, within ECD_03118at 3271.990 kb on + strand, within ECD_03118at 3272.078 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.103 kb on + strand, within ECD_03118at 3272.153 kb on + strand, within ECD_03118at 3272.153 kb on + strand, within ECD_03118at 3272.243 kb on + strand, within ECD_03118at 3272.243 kb on + strand, within ECD_03118at 3272.275 kb on + strand, within ECD_03118at 3272.275 kb on + strand, within ECD_03118at 3272.275 kb on + strand, within ECD_03118at 3272.409 kb on + strandat 3272.409 kb on + strandat 3272.409 kb on + strandat 3272.426 kb on + strandat 3272.426 kb on + strandat 3272.427 kb on - strandat 3272.455 kb on + strandat 3272.577 kb on + strand, within ECD_03119at 3272.631 kb on + strand, within ECD_03119at 3272.631 kb on + strand, within ECD_03119at 3272.684 kb on + strand, within ECD_03119at 3272.895 kb on - strandat 3272.895 kb on - strandat 3272.899 kb on - strand, within ECD_03120at 3272.936 kb on - strand, within ECD_03120at 3273.055 kb on + strand, within ECD_03120at 3273.055 kb on + strand, within ECD_03120at 3273.061 kb on - strand, within ECD_03120at 3273.115 kb on - strand, within ECD_03120at 3273.143 kb on - strand, within ECD_03120at 3273.187 kb on + strand, within ECD_03120at 3273.187 kb on + strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.226 kb on + strand, within ECD_03120at 3273.227 kb on - strand, within ECD_03120at 3273.316 kb on + strand, within ECD_03120at 3273.317 kb on - strand, within ECD_03120at 3273.317 kb on - strand, within ECD_03120at 3273.367 kb on + strand, within ECD_03120at 3273.371 kb on + strand, within ECD_03120

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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3,270,495 - ECD_03117 0.30 +1.2
3,270,617 + ECD_03117 0.44 +0.5
3,270,618 - ECD_03117 0.44 +1.7
3,270,789 + ECD_03117 0.64 +0.5
3,270,823 - ECD_03117 0.68 +0.7
3,270,862 + ECD_03117 0.72 +0.4
3,270,862 + ECD_03117 0.72 +1.4
3,270,863 - ECD_03117 0.72 -1.9
3,270,863 - ECD_03117 0.72 +2.8
3,270,932 + ECD_03117 0.80 +1.7
3,270,933 - ECD_03117 0.80 -1.2
3,271,033 + -1.2
3,271,099 - -1.4
3,271,105 + +1.4
3,271,105 + -0.1
3,271,279 + +1.1
3,271,301 + +3.4
3,271,320 + +1.0
3,271,392 - -1.6
3,271,394 + +1.9
3,271,396 + +0.6
3,271,396 + -2.4
3,271,417 + +1.0
3,271,417 + -2.0
3,271,417 + +0.8
3,271,417 + +1.0
3,271,418 - +1.3
3,271,418 - +1.7
3,271,430 + +1.9
3,271,430 + -0.1
3,271,451 + +1.0
3,271,451 + -0.6
3,271,452 - +2.3
3,271,567 + ECD_03118 0.14 -0.6
3,271,687 + ECD_03118 0.26 +1.1
3,271,688 - ECD_03118 0.26 -0.7
3,271,882 + ECD_03118 0.46 +0.8
3,271,982 + ECD_03118 0.57 +2.1
3,271,990 + ECD_03118 0.57 +2.4
3,271,990 + ECD_03118 0.57 +0.9
3,272,078 + ECD_03118 0.66 +1.4
3,272,080 + ECD_03118 0.67 +1.0
3,272,080 + ECD_03118 0.67 -1.3
3,272,080 + ECD_03118 0.67 +0.6
3,272,103 + ECD_03118 0.69 +1.8
3,272,153 + ECD_03118 0.74 +0.2
3,272,153 + ECD_03118 0.74 +1.8
3,272,243 + ECD_03118 0.84 +0.2
3,272,243 + ECD_03118 0.84 +1.5
3,272,275 + ECD_03118 0.87 -0.8
3,272,275 + ECD_03118 0.87 +2.1
3,272,275 + ECD_03118 0.87 +1.0
3,272,409 + +1.5
3,272,409 + +0.5
3,272,409 + +0.0
3,272,426 + -2.2
3,272,426 + -1.3
3,272,427 - -2.0
3,272,455 + -2.5
3,272,577 + ECD_03119 0.51 -0.8
3,272,631 + ECD_03119 0.69 -1.6
3,272,631 + ECD_03119 0.69 -0.6
3,272,684 + ECD_03119 0.87 -1.0
3,272,895 - +2.0
3,272,895 - -1.6
3,272,899 - ECD_03120 0.10 -0.5
3,272,936 - ECD_03120 0.14 -2.2
3,273,055 + ECD_03120 0.28 -0.3
3,273,055 + ECD_03120 0.28 +0.3
3,273,061 - ECD_03120 0.28 -2.6
3,273,115 - ECD_03120 0.35 +1.4
3,273,143 - ECD_03120 0.38 -1.4
3,273,187 + ECD_03120 0.43 +0.8
3,273,187 + ECD_03120 0.43 +0.1
3,273,188 - ECD_03120 0.43 -2.1
3,273,188 - ECD_03120 0.43 -0.4
3,273,188 - ECD_03120 0.43 +0.2
3,273,226 + ECD_03120 0.47 -0.5
3,273,227 - ECD_03120 0.47 +0.1
3,273,316 + ECD_03120 0.57 +0.3
3,273,317 - ECD_03120 0.57 +1.0
3,273,317 - ECD_03120 0.57 +0.5
3,273,367 + ECD_03120 0.63 +0.7
3,273,371 + ECD_03120 0.64 +0.9

Or see this region's nucleotide sequence