Strain Fitness in Escherichia coli BL21 around ECD_02845

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02844 and ECD_02845 are separated by 21 nucleotidesECD_02845 and ECD_02846 are separated by 4 nucleotides ECD_02844: ECD_02844 - malate synthase G, at 2,981,873 to 2,984,044 _02844 ECD_02845: ECD_02845 - DUF336 family protein, at 2,984,066 to 2,984,470 _02845 ECD_02846: ECD_02846 - glycolate oxidase 4Fe-4S iron-sulfur cluster subunit, at 2,984,475 to 2,985,698 _02846 Position (kb) 2984 2985Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2983.090 kb on - strand, within ECD_02844at 2983.186 kb on - strand, within ECD_02844at 2983.253 kb on - strand, within ECD_02844at 2983.268 kb on - strand, within ECD_02844at 2983.416 kb on - strand, within ECD_02844at 2983.416 kb on - strand, within ECD_02844at 2983.416 kb on - strand, within ECD_02844at 2983.416 kb on - strand, within ECD_02844at 2983.451 kb on + strand, within ECD_02844at 2983.451 kb on + strand, within ECD_02844at 2983.451 kb on + strand, within ECD_02844at 2983.452 kb on - strand, within ECD_02844at 2983.472 kb on - strand, within ECD_02844at 2983.617 kb on + strand, within ECD_02844at 2983.617 kb on + strand, within ECD_02844at 2983.618 kb on - strand, within ECD_02844at 2983.618 kb on - strand, within ECD_02844at 2983.619 kb on + strand, within ECD_02844at 2983.629 kb on + strand, within ECD_02844at 2983.630 kb on - strand, within ECD_02844at 2983.630 kb on - strand, within ECD_02844at 2983.801 kb on + strand, within ECD_02844at 2983.802 kb on - strand, within ECD_02844at 2983.804 kb on - strand, within ECD_02844at 2984.050 kb on - strandat 2984.050 kb on - strandat 2984.199 kb on - strand, within ECD_02845at 2984.221 kb on + strand, within ECD_02845at 2984.247 kb on + strand, within ECD_02845at 2984.248 kb on - strand, within ECD_02845at 2984.254 kb on + strand, within ECD_02845at 2984.255 kb on - strand, within ECD_02845at 2984.302 kb on + strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.304 kb on + strand, within ECD_02845at 2984.304 kb on + strand, within ECD_02845at 2984.304 kb on + strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.340 kb on - strand, within ECD_02845at 2984.462 kb on - strandat 2984.659 kb on + strand, within ECD_02846at 2984.659 kb on + strand, within ECD_02846at 2984.659 kb on + strand, within ECD_02846at 2984.660 kb on - strand, within ECD_02846at 2984.660 kb on - strand, within ECD_02846at 2984.660 kb on - strand, within ECD_02846at 2984.711 kb on + strand, within ECD_02846at 2984.769 kb on + strand, within ECD_02846at 2984.770 kb on - strand, within ECD_02846at 2984.897 kb on - strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.926 kb on + strand, within ECD_02846at 2985.011 kb on + strand, within ECD_02846at 2985.011 kb on + strand, within ECD_02846at 2985.012 kb on - strand, within ECD_02846at 2985.014 kb on + strand, within ECD_02846at 2985.015 kb on - strand, within ECD_02846at 2985.051 kb on - strand, within ECD_02846at 2985.058 kb on + strand, within ECD_02846at 2985.059 kb on - strand, within ECD_02846at 2985.162 kb on - strand, within ECD_02846at 2985.187 kb on - strand, within ECD_02846at 2985.225 kb on - strand, within ECD_02846at 2985.225 kb on - strand, within ECD_02846at 2985.399 kb on - strand, within ECD_02846at 2985.428 kb on - strand, within ECD_02846at 2985.462 kb on - strand, within ECD_02846

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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2,983,090 - ECD_02844 0.56 -1.1
2,983,186 - ECD_02844 0.60 +0.7
2,983,253 - ECD_02844 0.64 -1.2
2,983,268 - ECD_02844 0.64 -1.7
2,983,416 - ECD_02844 0.71 +1.7
2,983,416 - ECD_02844 0.71 +0.3
2,983,416 - ECD_02844 0.71 +0.9
2,983,416 - ECD_02844 0.71 -1.8
2,983,451 + ECD_02844 0.73 +1.3
2,983,451 + ECD_02844 0.73 -0.6
2,983,451 + ECD_02844 0.73 -2.3
2,983,452 - ECD_02844 0.73 -0.7
2,983,472 - ECD_02844 0.74 -1.8
2,983,617 + ECD_02844 0.80 +1.2
2,983,617 + ECD_02844 0.80 +0.9
2,983,618 - ECD_02844 0.80 +1.0
2,983,618 - ECD_02844 0.80 -2.9
2,983,619 + ECD_02844 0.80 +0.1
2,983,629 + ECD_02844 0.81 -1.8
2,983,630 - ECD_02844 0.81 -0.3
2,983,630 - ECD_02844 0.81 -1.1
2,983,801 + ECD_02844 0.89 +3.1
2,983,802 - ECD_02844 0.89 +0.8
2,983,804 - ECD_02844 0.89 -5.0
2,984,050 - -0.4
2,984,050 - -0.5
2,984,199 - ECD_02845 0.33 +0.7
2,984,221 + ECD_02845 0.38 -2.1
2,984,247 + ECD_02845 0.45 -2.4
2,984,248 - ECD_02845 0.45 -0.5
2,984,254 + ECD_02845 0.46 +0.2
2,984,255 - ECD_02845 0.47 +1.8
2,984,302 + ECD_02845 0.58 -1.3
2,984,303 - ECD_02845 0.59 -0.5
2,984,303 - ECD_02845 0.59 +0.6
2,984,303 - ECD_02845 0.59 +1.1
2,984,303 - ECD_02845 0.59 -1.9
2,984,303 - ECD_02845 0.59 +0.3
2,984,303 - ECD_02845 0.59 +0.2
2,984,303 - ECD_02845 0.59 -0.5
2,984,304 + ECD_02845 0.59 -0.2
2,984,304 + ECD_02845 0.59 -1.8
2,984,304 + ECD_02845 0.59 -1.0
2,984,305 - ECD_02845 0.59 -2.8
2,984,305 - ECD_02845 0.59 +0.5
2,984,305 - ECD_02845 0.59 +2.3
2,984,305 - ECD_02845 0.59 +3.0
2,984,305 - ECD_02845 0.59 -1.8
2,984,305 - ECD_02845 0.59 +0.1
2,984,305 - ECD_02845 0.59 +0.7
2,984,340 - ECD_02845 0.68 -2.0
2,984,462 - -0.1
2,984,659 + ECD_02846 0.15 -1.4
2,984,659 + ECD_02846 0.15 +1.5
2,984,659 + ECD_02846 0.15 +2.1
2,984,660 - ECD_02846 0.15 -1.2
2,984,660 - ECD_02846 0.15 -0.9
2,984,660 - ECD_02846 0.15 +0.1
2,984,711 + ECD_02846 0.19 -2.2
2,984,769 + ECD_02846 0.24 -0.9
2,984,770 - ECD_02846 0.24 -0.2
2,984,897 - ECD_02846 0.34 -1.9
2,984,898 + ECD_02846 0.35 +1.3
2,984,898 + ECD_02846 0.35 -0.1
2,984,898 + ECD_02846 0.35 +0.3
2,984,898 + ECD_02846 0.35 +1.0
2,984,898 + ECD_02846 0.35 +0.5
2,984,898 + ECD_02846 0.35 +1.7
2,984,899 - ECD_02846 0.35 -0.2
2,984,899 - ECD_02846 0.35 -2.8
2,984,899 - ECD_02846 0.35 +0.1
2,984,899 - ECD_02846 0.35 -0.2
2,984,899 - ECD_02846 0.35 +1.1
2,984,926 + ECD_02846 0.37 +0.4
2,985,011 + ECD_02846 0.44 +1.4
2,985,011 + ECD_02846 0.44 -0.8
2,985,012 - ECD_02846 0.44 +0.7
2,985,014 + ECD_02846 0.44 +2.3
2,985,015 - ECD_02846 0.44 -1.4
2,985,051 - ECD_02846 0.47 -1.9
2,985,058 + ECD_02846 0.48 -1.3
2,985,059 - ECD_02846 0.48 +1.3
2,985,162 - ECD_02846 0.56 +0.8
2,985,187 - ECD_02846 0.58 +0.8
2,985,225 - ECD_02846 0.61 +0.9
2,985,225 - ECD_02846 0.61 -1.5
2,985,399 - ECD_02846 0.75 -2.5
2,985,428 - ECD_02846 0.78 -0.1
2,985,462 - ECD_02846 0.81 -2.0

Or see this region's nucleotide sequence