Strain Fitness in Escherichia coli BL21 around ECD_02442

Experiment: lambda1857_phage_12.5_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02441 and ECD_02442 are separated by 117 nucleotidesECD_02442 and ECD_02443 are separated by 197 nucleotides ECD_02441: ECD_02441 - DUF4380 domain-containing TPR repeat protein, at 2,545,269 to 2,548,550 _02441 ECD_02442: ECD_02442 - putative DNA-binding transcriptional regulator, at 2,548,668 to 2,549,861 _02442 ECD_02443: ECD_02443 - serine hydroxymethyltransferase, at 2,550,059 to 2,551,312 _02443 Position (kb) 2548 2549 2550Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2547.707 kb on + strand, within ECD_02441at 2547.726 kb on + strand, within ECD_02441at 2547.792 kb on - strand, within ECD_02441at 2547.792 kb on - strand, within ECD_02441at 2547.792 kb on - strand, within ECD_02441at 2547.792 kb on - strand, within ECD_02441at 2547.793 kb on + strand, within ECD_02441at 2547.793 kb on + strand, within ECD_02441at 2547.793 kb on + strand, within ECD_02441at 2547.794 kb on - strand, within ECD_02441at 2547.794 kb on - strand, within ECD_02441at 2547.794 kb on - strand, within ECD_02441at 2547.794 kb on - strand, within ECD_02441at 2547.847 kb on + strand, within ECD_02441at 2547.859 kb on + strand, within ECD_02441at 2547.862 kb on + strand, within ECD_02441at 2548.019 kb on - strand, within ECD_02441at 2548.167 kb on - strand, within ECD_02441at 2548.200 kb on - strand, within ECD_02441at 2548.295 kb on + strandat 2548.352 kb on - strandat 2548.429 kb on + strandat 2548.482 kb on + strandat 2548.482 kb on + strandat 2548.482 kb on + strandat 2548.482 kb on + strandat 2548.482 kb on + strandat 2548.482 kb on + strandat 2548.482 kb on + strandat 2548.482 kb on + strandat 2548.483 kb on - strandat 2548.483 kb on - strandat 2548.483 kb on - strandat 2548.483 kb on - strandat 2548.485 kb on - strandat 2548.505 kb on - strandat 2548.603 kb on - strandat 2548.603 kb on - strandat 2548.874 kb on + strand, within ECD_02442at 2548.874 kb on + strand, within ECD_02442at 2548.875 kb on - strand, within ECD_02442at 2549.066 kb on + strand, within ECD_02442at 2549.183 kb on - strand, within ECD_02442at 2549.187 kb on + strand, within ECD_02442at 2549.188 kb on - strand, within ECD_02442at 2549.364 kb on + strand, within ECD_02442at 2549.670 kb on + strand, within ECD_02442at 2549.708 kb on + strand, within ECD_02442at 2549.708 kb on + strand, within ECD_02442at 2549.708 kb on + strand, within ECD_02442at 2549.709 kb on - strand, within ECD_02442at 2549.711 kb on + strand, within ECD_02442at 2549.794 kb on + strandat 2549.794 kb on + strandat 2549.826 kb on + strandat 2549.832 kb on + strandat 2549.833 kb on - strandat 2549.964 kb on + strandat 2550.067 kb on - strandat 2550.417 kb on - strand, within ECD_02443at 2550.644 kb on - strand, within ECD_02443at 2550.713 kb on - strand, within ECD_02443at 2550.727 kb on - strand, within ECD_02443

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
remove
2,547,707 + ECD_02441 0.74 -0.1
2,547,726 + ECD_02441 0.75 -0.1
2,547,792 - ECD_02441 0.77 +1.5
2,547,792 - ECD_02441 0.77 +1.6
2,547,792 - ECD_02441 0.77 -0.6
2,547,792 - ECD_02441 0.77 -2.1
2,547,793 + ECD_02441 0.77 -1.8
2,547,793 + ECD_02441 0.77 -1.5
2,547,793 + ECD_02441 0.77 -2.0
2,547,794 - ECD_02441 0.77 -2.1
2,547,794 - ECD_02441 0.77 +0.6
2,547,794 - ECD_02441 0.77 -0.5
2,547,794 - ECD_02441 0.77 -1.3
2,547,847 + ECD_02441 0.79 -2.4
2,547,859 + ECD_02441 0.79 +0.1
2,547,862 + ECD_02441 0.79 -1.5
2,548,019 - ECD_02441 0.84 +1.4
2,548,167 - ECD_02441 0.88 -0.8
2,548,200 - ECD_02441 0.89 +1.1
2,548,295 + +0.8
2,548,352 - -0.1
2,548,429 + +0.8
2,548,482 + +1.3
2,548,482 + -1.4
2,548,482 + -0.4
2,548,482 + -0.0
2,548,482 + +0.7
2,548,482 + -0.4
2,548,482 + +1.0
2,548,482 + -0.5
2,548,483 - +1.5
2,548,483 - +0.9
2,548,483 - +1.5
2,548,483 - +1.6
2,548,485 - -1.0
2,548,505 - +0.5
2,548,603 - +0.2
2,548,603 - +0.3
2,548,874 + ECD_02442 0.17 +0.4
2,548,874 + ECD_02442 0.17 +0.4
2,548,875 - ECD_02442 0.17 -1.4
2,549,066 + ECD_02442 0.33 +1.7
2,549,183 - ECD_02442 0.43 -2.6
2,549,187 + ECD_02442 0.43 -0.4
2,549,188 - ECD_02442 0.44 +0.6
2,549,364 + ECD_02442 0.58 +0.7
2,549,670 + ECD_02442 0.84 +2.0
2,549,708 + ECD_02442 0.87 +1.8
2,549,708 + ECD_02442 0.87 +0.2
2,549,708 + ECD_02442 0.87 +0.5
2,549,709 - ECD_02442 0.87 +1.1
2,549,711 + ECD_02442 0.87 -0.8
2,549,794 + -1.0
2,549,794 + -0.3
2,549,826 + +0.0
2,549,832 + +0.7
2,549,833 - -3.1
2,549,964 + -2.2
2,550,067 - -1.3
2,550,417 - ECD_02443 0.29 -1.3
2,550,644 - ECD_02443 0.47 -1.7
2,550,713 - ECD_02443 0.52 -1.7
2,550,727 - ECD_02443 0.53 -2.6

Or see this region's nucleotide sequence