Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02441 and ECD_02442 are separated by 117 nucleotides ECD_02442 and ECD_02443 are separated by 197 nucleotides
ECD_02441: ECD_02441 - DUF4380 domain-containing TPR repeat protein, at 2,545,269 to 2,548,550
_02441
ECD_02442: ECD_02442 - putative DNA-binding transcriptional regulator, at 2,548,668 to 2,549,861
_02442
ECD_02443: ECD_02443 - serine hydroxymethyltransferase, at 2,550,059 to 2,551,312
_02443
Position (kb)
2548
2549
2550 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2547.707 kb on + strand, within ECD_02441 at 2547.726 kb on + strand, within ECD_02441 at 2547.792 kb on - strand, within ECD_02441 at 2547.792 kb on - strand, within ECD_02441 at 2547.792 kb on - strand, within ECD_02441 at 2547.792 kb on - strand, within ECD_02441 at 2547.793 kb on + strand, within ECD_02441 at 2547.793 kb on + strand, within ECD_02441 at 2547.793 kb on + strand, within ECD_02441 at 2547.794 kb on - strand, within ECD_02441 at 2547.794 kb on - strand, within ECD_02441 at 2547.794 kb on - strand, within ECD_02441 at 2547.794 kb on - strand, within ECD_02441 at 2547.847 kb on + strand, within ECD_02441 at 2547.859 kb on + strand, within ECD_02441 at 2547.862 kb on + strand, within ECD_02441 at 2548.019 kb on - strand, within ECD_02441 at 2548.167 kb on - strand, within ECD_02441 at 2548.200 kb on - strand, within ECD_02441 at 2548.295 kb on + strand at 2548.352 kb on - strand at 2548.429 kb on + strand at 2548.482 kb on + strand at 2548.482 kb on + strand at 2548.482 kb on + strand at 2548.482 kb on + strand at 2548.482 kb on + strand at 2548.482 kb on + strand at 2548.482 kb on + strand at 2548.482 kb on + strand at 2548.483 kb on - strand at 2548.483 kb on - strand at 2548.483 kb on - strand at 2548.483 kb on - strand at 2548.485 kb on - strand at 2548.505 kb on - strand at 2548.603 kb on - strand at 2548.603 kb on - strand at 2548.874 kb on + strand, within ECD_02442 at 2548.874 kb on + strand, within ECD_02442 at 2548.875 kb on - strand, within ECD_02442 at 2549.066 kb on + strand, within ECD_02442 at 2549.183 kb on - strand, within ECD_02442 at 2549.187 kb on + strand, within ECD_02442 at 2549.188 kb on - strand, within ECD_02442 at 2549.364 kb on + strand, within ECD_02442 at 2549.670 kb on + strand, within ECD_02442 at 2549.708 kb on + strand, within ECD_02442 at 2549.708 kb on + strand, within ECD_02442 at 2549.708 kb on + strand, within ECD_02442 at 2549.709 kb on - strand, within ECD_02442 at 2549.711 kb on + strand, within ECD_02442 at 2549.794 kb on + strand at 2549.794 kb on + strand at 2549.826 kb on + strand at 2549.832 kb on + strand at 2549.833 kb on - strand at 2549.964 kb on + strand at 2550.067 kb on - strand at 2550.417 kb on - strand, within ECD_02443 at 2550.644 kb on - strand, within ECD_02443 at 2550.713 kb on - strand, within ECD_02443 at 2550.727 kb on - strand, within ECD_02443
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 2,547,707 + ECD_02441 0.74 -0.1 2,547,726 + ECD_02441 0.75 -0.1 2,547,792 - ECD_02441 0.77 +1.5 2,547,792 - ECD_02441 0.77 +1.6 2,547,792 - ECD_02441 0.77 -0.6 2,547,792 - ECD_02441 0.77 -2.1 2,547,793 + ECD_02441 0.77 -1.8 2,547,793 + ECD_02441 0.77 -1.5 2,547,793 + ECD_02441 0.77 -2.0 2,547,794 - ECD_02441 0.77 -2.1 2,547,794 - ECD_02441 0.77 +0.6 2,547,794 - ECD_02441 0.77 -0.5 2,547,794 - ECD_02441 0.77 -1.3 2,547,847 + ECD_02441 0.79 -2.4 2,547,859 + ECD_02441 0.79 +0.1 2,547,862 + ECD_02441 0.79 -1.5 2,548,019 - ECD_02441 0.84 +1.4 2,548,167 - ECD_02441 0.88 -0.8 2,548,200 - ECD_02441 0.89 +1.1 2,548,295 + +0.8 2,548,352 - -0.1 2,548,429 + +0.8 2,548,482 + +1.3 2,548,482 + -1.4 2,548,482 + -0.4 2,548,482 + -0.0 2,548,482 + +0.7 2,548,482 + -0.4 2,548,482 + +1.0 2,548,482 + -0.5 2,548,483 - +1.5 2,548,483 - +0.9 2,548,483 - +1.5 2,548,483 - +1.6 2,548,485 - -1.0 2,548,505 - +0.5 2,548,603 - +0.2 2,548,603 - +0.3 2,548,874 + ECD_02442 0.17 +0.4 2,548,874 + ECD_02442 0.17 +0.4 2,548,875 - ECD_02442 0.17 -1.4 2,549,066 + ECD_02442 0.33 +1.7 2,549,183 - ECD_02442 0.43 -2.6 2,549,187 + ECD_02442 0.43 -0.4 2,549,188 - ECD_02442 0.44 +0.6 2,549,364 + ECD_02442 0.58 +0.7 2,549,670 + ECD_02442 0.84 +2.0 2,549,708 + ECD_02442 0.87 +1.8 2,549,708 + ECD_02442 0.87 +0.2 2,549,708 + ECD_02442 0.87 +0.5 2,549,709 - ECD_02442 0.87 +1.1 2,549,711 + ECD_02442 0.87 -0.8 2,549,794 + -1.0 2,549,794 + -0.3 2,549,826 + +0.0 2,549,832 + +0.7 2,549,833 - -3.1 2,549,964 + -2.2 2,550,067 - -1.3 2,550,417 - ECD_02443 0.29 -1.3 2,550,644 - ECD_02443 0.47 -1.7 2,550,713 - ECD_02443 0.52 -1.7 2,550,727 - ECD_02443 0.53 -2.6
Or see this region's nucleotide sequence