Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02329 and ECD_02330 overlap by 83 nucleotides ECD_02330 and ECD_02331 are separated by 85 nucleotides ECD_02331 and ECD_02332 are separated by 95 nucleotides ECD_02332 and ECD_02333 are separated by 206 nucleotides
ECD_02329: ECD_02329 - N-acetylmuramic acid permease, EIIBC component, PTS system, at 2,419,076 to 2,420,500
_02329
ECD_02330: ECD_02330 - penicillin binding protein PBP4B; weak DD-carboxypeptidase activity, at 2,420,418 to 2,420,594
_02330
ECD_02331: ECD_02331 - porphyrinogen oxidase, cytoplasmic, at 2,420,680 to 2,421,579
_02331
ECD_02332: ECD_02332 - RpoE-regulated lipoprotein, at 2,421,675 to 2,422,250
_02332
ECD_02333: ECD_02333 - inner membrane protein, at 2,422,457 to 2,422,906
_02333
Position (kb)
2420
2421
2422 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2419.684 kb on + strand, within ECD_02329 at 2419.759 kb on + strand, within ECD_02329 at 2419.759 kb on + strand, within ECD_02329 at 2419.760 kb on - strand, within ECD_02329 at 2419.889 kb on + strand, within ECD_02329 at 2419.900 kb on + strand, within ECD_02329 at 2419.901 kb on - strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.931 kb on - strand, within ECD_02329 at 2419.931 kb on - strand, within ECD_02329 at 2419.946 kb on - strand, within ECD_02329 at 2419.961 kb on - strand, within ECD_02329 at 2420.079 kb on - strand, within ECD_02329 at 2420.080 kb on - strand, within ECD_02329 at 2420.135 kb on + strand, within ECD_02329 at 2420.257 kb on + strand, within ECD_02329 at 2420.334 kb on + strand, within ECD_02329 at 2420.455 kb on + strand at 2420.502 kb on - strand, within ECD_02330 at 2420.523 kb on + strand, within ECD_02330 at 2420.543 kb on + strand, within ECD_02330 at 2420.543 kb on + strand, within ECD_02330 at 2420.543 kb on + strand, within ECD_02330 at 2420.588 kb on + strand at 2420.588 kb on + strand at 2420.588 kb on + strand at 2420.589 kb on - strand at 2420.589 kb on - strand at 2420.600 kb on + strand at 2420.600 kb on + strand at 2420.601 kb on - strand at 2420.602 kb on + strand at 2420.602 kb on + strand at 2420.602 kb on + strand at 2420.603 kb on - strand at 2420.623 kb on + strand at 2420.717 kb on + strand at 2420.766 kb on + strand at 2420.841 kb on - strand, within ECD_02331 at 2420.841 kb on - strand, within ECD_02331 at 2421.103 kb on - strand, within ECD_02331 at 2421.331 kb on - strand, within ECD_02331 at 2421.477 kb on + strand, within ECD_02331 at 2421.735 kb on + strand, within ECD_02332 at 2421.736 kb on - strand, within ECD_02332 at 2421.776 kb on + strand, within ECD_02332 at 2421.777 kb on - strand, within ECD_02332 at 2421.777 kb on - strand, within ECD_02332 at 2421.779 kb on + strand, within ECD_02332 at 2421.780 kb on - strand, within ECD_02332 at 2422.179 kb on - strand, within ECD_02332 at 2422.179 kb on - strand, within ECD_02332 at 2422.228 kb on - strand at 2422.228 kb on - strand at 2422.274 kb on - strand at 2422.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 2,419,684 + ECD_02329 0.43 -1.9 2,419,759 + ECD_02329 0.48 +0.3 2,419,759 + ECD_02329 0.48 -2.6 2,419,760 - ECD_02329 0.48 -0.4 2,419,889 + ECD_02329 0.57 +0.3 2,419,900 + ECD_02329 0.58 -0.5 2,419,901 - ECD_02329 0.58 -0.1 2,419,930 + ECD_02329 0.60 -0.2 2,419,930 + ECD_02329 0.60 +1.5 2,419,930 + ECD_02329 0.60 -0.2 2,419,930 + ECD_02329 0.60 +2.4 2,419,930 + ECD_02329 0.60 -3.6 2,419,931 - ECD_02329 0.60 +1.3 2,419,931 - ECD_02329 0.60 -0.2 2,419,946 - ECD_02329 0.61 -1.1 2,419,961 - ECD_02329 0.62 +0.5 2,420,079 - ECD_02329 0.70 +0.5 2,420,080 - ECD_02329 0.70 -2.0 2,420,135 + ECD_02329 0.74 +1.8 2,420,257 + ECD_02329 0.83 -0.3 2,420,334 + ECD_02329 0.88 +0.4 2,420,455 + +0.3 2,420,502 - ECD_02330 0.47 -0.7 2,420,523 + ECD_02330 0.59 +1.0 2,420,543 + ECD_02330 0.71 -2.8 2,420,543 + ECD_02330 0.71 +0.5 2,420,543 + ECD_02330 0.71 -0.7 2,420,588 + -0.7 2,420,588 + +0.7 2,420,588 + +0.8 2,420,589 - -1.4 2,420,589 - -1.3 2,420,600 + -0.6 2,420,600 + -0.9 2,420,601 - -2.2 2,420,602 + -1.9 2,420,602 + +1.9 2,420,602 + +1.7 2,420,603 - -1.5 2,420,623 + +0.0 2,420,717 + -3.4 2,420,766 + -0.8 2,420,841 - ECD_02331 0.18 -1.9 2,420,841 - ECD_02331 0.18 -2.7 2,421,103 - ECD_02331 0.47 -2.1 2,421,331 - ECD_02331 0.72 -3.7 2,421,477 + ECD_02331 0.89 -2.7 2,421,735 + ECD_02332 0.10 -1.7 2,421,736 - ECD_02332 0.11 -3.4 2,421,776 + ECD_02332 0.18 -3.1 2,421,777 - ECD_02332 0.18 -1.1 2,421,777 - ECD_02332 0.18 -1.7 2,421,779 + ECD_02332 0.18 -1.0 2,421,780 - ECD_02332 0.18 +0.6 2,422,179 - ECD_02332 0.88 +0.4 2,422,179 - ECD_02332 0.88 +1.4 2,422,228 - -0.2 2,422,228 - -1.1 2,422,274 - +0.2 2,422,382 - -1.9
Or see this region's nucleotide sequence