Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02327 and ECD_02328 are separated by 163 nucleotides ECD_02328 and ECD_02329 are separated by 3 nucleotides
ECD_02327: ECD_02327 - repressor for murPQ, MurNAc 6-P inducible, at 2,417,155 to 2,418,012
_02327
ECD_02328: ECD_02328 - N-acetylmuramic acid 6-phosphate (MurNAc-6-P) etherase, at 2,418,176 to 2,419,072
_02328
ECD_02329: ECD_02329 - N-acetylmuramic acid permease, EIIBC component, PTS system, at 2,419,076 to 2,420,500
_02329
Position (kb)
2418
2419
2420 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2417.217 kb on + strand at 2417.218 kb on - strand at 2417.218 kb on - strand at 2417.290 kb on - strand, within ECD_02327 at 2417.449 kb on - strand, within ECD_02327 at 2417.449 kb on - strand, within ECD_02327 at 2417.498 kb on - strand, within ECD_02327 at 2417.498 kb on - strand, within ECD_02327 at 2417.793 kb on - strand, within ECD_02327 at 2417.793 kb on - strand, within ECD_02327 at 2417.801 kb on - strand, within ECD_02327 at 2418.006 kb on - strand at 2418.006 kb on - strand at 2418.058 kb on - strand at 2418.058 kb on - strand at 2418.159 kb on + strand at 2418.159 kb on + strand at 2418.160 kb on - strand at 2418.162 kb on + strand at 2418.163 kb on - strand at 2418.277 kb on + strand, within ECD_02328 at 2418.374 kb on + strand, within ECD_02328 at 2418.726 kb on + strand, within ECD_02328 at 2418.895 kb on + strand, within ECD_02328 at 2418.945 kb on + strand, within ECD_02328 at 2419.117 kb on + strand at 2419.163 kb on - strand at 2419.163 kb on - strand at 2419.185 kb on + strand at 2419.185 kb on + strand at 2419.186 kb on - strand at 2419.495 kb on - strand, within ECD_02329 at 2419.558 kb on + strand, within ECD_02329 at 2419.611 kb on - strand, within ECD_02329 at 2419.684 kb on + strand, within ECD_02329 at 2419.759 kb on + strand, within ECD_02329 at 2419.759 kb on + strand, within ECD_02329 at 2419.760 kb on - strand, within ECD_02329 at 2419.889 kb on + strand, within ECD_02329 at 2419.900 kb on + strand, within ECD_02329 at 2419.901 kb on - strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.930 kb on + strand, within ECD_02329 at 2419.931 kb on - strand, within ECD_02329 at 2419.931 kb on - strand, within ECD_02329 at 2419.946 kb on - strand, within ECD_02329 at 2419.961 kb on - strand, within ECD_02329
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 2,417,217 + -2.0 2,417,218 - +1.5 2,417,218 - -0.5 2,417,290 - ECD_02327 0.16 +2.1 2,417,449 - ECD_02327 0.34 +0.9 2,417,449 - ECD_02327 0.34 +1.1 2,417,498 - ECD_02327 0.40 +2.1 2,417,498 - ECD_02327 0.40 +1.1 2,417,793 - ECD_02327 0.74 +0.7 2,417,793 - ECD_02327 0.74 +0.0 2,417,801 - ECD_02327 0.75 +2.0 2,418,006 - +0.3 2,418,006 - -0.6 2,418,058 - +0.8 2,418,058 - +0.9 2,418,159 + +0.1 2,418,159 + -1.0 2,418,160 - -0.7 2,418,162 + -0.2 2,418,163 - +0.7 2,418,277 + ECD_02328 0.11 +0.8 2,418,374 + ECD_02328 0.22 +0.3 2,418,726 + ECD_02328 0.61 +1.5 2,418,895 + ECD_02328 0.80 +1.0 2,418,945 + ECD_02328 0.86 +0.5 2,419,117 + +0.6 2,419,163 - +1.2 2,419,163 - -2.2 2,419,185 + +2.0 2,419,185 + +1.1 2,419,186 - -0.6 2,419,495 - ECD_02329 0.29 -3.2 2,419,558 + ECD_02329 0.34 +0.7 2,419,611 - ECD_02329 0.38 -0.0 2,419,684 + ECD_02329 0.43 -1.9 2,419,759 + ECD_02329 0.48 +0.3 2,419,759 + ECD_02329 0.48 -2.6 2,419,760 - ECD_02329 0.48 -0.4 2,419,889 + ECD_02329 0.57 +0.3 2,419,900 + ECD_02329 0.58 -0.5 2,419,901 - ECD_02329 0.58 -0.1 2,419,930 + ECD_02329 0.60 -0.2 2,419,930 + ECD_02329 0.60 +1.5 2,419,930 + ECD_02329 0.60 -0.2 2,419,930 + ECD_02329 0.60 +2.4 2,419,930 + ECD_02329 0.60 -3.6 2,419,931 - ECD_02329 0.60 +1.3 2,419,931 - ECD_02329 0.60 -0.2 2,419,946 - ECD_02329 0.61 -1.1 2,419,961 - ECD_02329 0.62 +0.5
Or see this region's nucleotide sequence