Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02203 and ECD_02204 overlap by 4 nucleotides ECD_02204 and ECD_02205 overlap by 4 nucleotides ECD_02205 and ECD_02206 are separated by 11 nucleotides ECD_02206 and ECD_02207 are separated by 14 nucleotides ECD_02207 and ECD_02208 overlap by 4 nucleotides
ECD_02203: ECD_02203 - NADH:ubiquinone oxidoreductase, membrane subunit L, at 2,280,457 to 2,282,298
_02203
ECD_02204: ECD_02204 - NADH:ubiquinone oxidoreductase, membrane subunit K, at 2,282,295 to 2,282,597
_02204
ECD_02205: ECD_02205 - NADH:ubiquinone oxidoreductase, membrane subunit J, at 2,282,594 to 2,283,148
_02205
ECD_02206: ECD_02206 - NADH:ubiquinone oxidoreductase, chain I, at 2,283,160 to 2,283,702
_02206
ECD_02207: ECD_02207 - NADH:ubiquinone oxidoreductase, membrane subunit H, at 2,283,717 to 2,284,694
_02207
ECD_02208: ECD_02208 - NADH:ubiquinone oxidoreductase, chain G, at 2,284,691 to 2,287,417
_02208
Position (kb)
2283
2284 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2282.414 kb on - strand, within ECD_02204 at 2282.414 kb on - strand, within ECD_02204 at 2282.713 kb on + strand, within ECD_02205 at 2282.713 kb on + strand, within ECD_02205 at 2282.713 kb on + strand, within ECD_02205 at 2282.714 kb on - strand, within ECD_02205 at 2282.714 kb on - strand, within ECD_02205 at 2282.755 kb on + strand, within ECD_02205 at 2282.759 kb on - strand, within ECD_02205 at 2282.771 kb on - strand, within ECD_02205 at 2283.004 kb on - strand, within ECD_02205 at 2283.050 kb on - strand, within ECD_02205 at 2283.110 kb on + strand at 2283.131 kb on - strand at 2283.258 kb on + strand, within ECD_02206 at 2283.261 kb on - strand, within ECD_02206 at 2283.309 kb on - strand, within ECD_02206 at 2283.330 kb on - strand, within ECD_02206 at 2283.561 kb on + strand, within ECD_02206 at 2283.658 kb on - strand at 2283.695 kb on - strand at 2283.709 kb on - strand at 2283.805 kb on - strand at 2283.860 kb on + strand, within ECD_02207 at 2283.861 kb on - strand, within ECD_02207 at 2283.970 kb on + strand, within ECD_02207 at 2283.970 kb on + strand, within ECD_02207 at 2284.283 kb on + strand, within ECD_02207 at 2284.283 kb on + strand, within ECD_02207 at 2284.284 kb on - strand, within ECD_02207 at 2284.421 kb on + strand, within ECD_02207 at 2284.422 kb on - strand, within ECD_02207 at 2284.422 kb on - strand, within ECD_02207 at 2284.488 kb on - strand, within ECD_02207
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 2,282,414 - ECD_02204 0.39 -2.6 2,282,414 - ECD_02204 0.39 -2.1 2,282,713 + ECD_02205 0.21 -1.3 2,282,713 + ECD_02205 0.21 -1.2 2,282,713 + ECD_02205 0.21 -0.8 2,282,714 - ECD_02205 0.22 -1.6 2,282,714 - ECD_02205 0.22 -1.7 2,282,755 + ECD_02205 0.29 -1.1 2,282,759 - ECD_02205 0.30 -2.1 2,282,771 - ECD_02205 0.32 -3.3 2,283,004 - ECD_02205 0.74 -3.0 2,283,050 - ECD_02205 0.82 -1.1 2,283,110 + +1.1 2,283,131 - -2.9 2,283,258 + ECD_02206 0.18 -3.4 2,283,261 - ECD_02206 0.19 -2.0 2,283,309 - ECD_02206 0.27 -2.9 2,283,330 - ECD_02206 0.31 -2.1 2,283,561 + ECD_02206 0.74 -1.5 2,283,658 - -2.4 2,283,695 - -3.6 2,283,709 - -0.3 2,283,805 - -3.0 2,283,860 + ECD_02207 0.15 -0.4 2,283,861 - ECD_02207 0.15 -0.3 2,283,970 + ECD_02207 0.26 +0.1 2,283,970 + ECD_02207 0.26 -2.4 2,284,283 + ECD_02207 0.58 -1.3 2,284,283 + ECD_02207 0.58 -2.1 2,284,284 - ECD_02207 0.58 -1.7 2,284,421 + ECD_02207 0.72 -1.9 2,284,422 - ECD_02207 0.72 -2.1 2,284,422 - ECD_02207 0.72 -1.0 2,284,488 - ECD_02207 0.79 -2.2
Or see this region's nucleotide sequence