Strain Fitness in Escherichia coli BL21 around ECD_02165

Experiment: lambda1857_phage_12.5_MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02163 and ECD_02164 are separated by 214 nucleotidesECD_02164 and ECD_02165 are separated by 41 nucleotidesECD_02165 and ECD_02166 are separated by 4 nucleotides ECD_02163: ECD_02163 - acid-inducible Kdo/WaaP family putative kinase, at 2,239,191 to 2,239,841 _02163 ECD_02164: ECD_02164 - hypothetical protein, at 2,240,056 to 2,240,262 _02164 ECD_02165: ECD_02165 - periplasmic glycerophosphodiester phosphodiesterase, at 2,240,304 to 2,241,380 _02165 ECD_02166: ECD_02166 - sn-glycerol-3-phosphate transporter, at 2,241,385 to 2,242,743 _02166 Position (kb) 2240 2241 2242Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2239.364 kb on - strand, within ECD_02163at 2239.367 kb on + strand, within ECD_02163at 2239.368 kb on - strand, within ECD_02163at 2239.758 kb on - strand, within ECD_02163at 2239.879 kb on - strandat 2239.881 kb on - strandat 2239.881 kb on - strandat 2239.881 kb on - strandat 2240.300 kb on - strandat 2240.391 kb on + strandat 2240.392 kb on - strandat 2240.392 kb on - strandat 2240.392 kb on - strandat 2240.501 kb on + strand, within ECD_02165at 2240.535 kb on - strand, within ECD_02165at 2240.535 kb on - strand, within ECD_02165at 2240.540 kb on - strand, within ECD_02165at 2240.583 kb on - strand, within ECD_02165at 2240.609 kb on - strand, within ECD_02165at 2240.609 kb on - strand, within ECD_02165at 2240.615 kb on - strand, within ECD_02165at 2241.077 kb on - strand, within ECD_02165at 2241.200 kb on - strand, within ECD_02165at 2241.243 kb on - strand, within ECD_02165at 2241.331 kb on - strandat 2241.331 kb on - strandat 2241.333 kb on - strandat 2241.333 kb on - strandat 2241.333 kb on - strandat 2241.333 kb on - strandat 2241.333 kb on - strandat 2241.410 kb on - strandat 2241.528 kb on - strand, within ECD_02166at 2241.598 kb on - strand, within ECD_02166at 2241.660 kb on - strand, within ECD_02166at 2241.660 kb on - strand, within ECD_02166at 2241.685 kb on - strand, within ECD_02166at 2241.851 kb on + strand, within ECD_02166at 2241.860 kb on + strand, within ECD_02166at 2241.877 kb on - strand, within ECD_02166at 2241.947 kb on + strand, within ECD_02166at 2242.001 kb on + strand, within ECD_02166at 2242.002 kb on - strand, within ECD_02166at 2242.170 kb on + strand, within ECD_02166at 2242.171 kb on - strand, within ECD_02166at 2242.171 kb on - strand, within ECD_02166at 2242.171 kb on - strand, within ECD_02166at 2242.172 kb on + strand, within ECD_02166at 2242.172 kb on + strand, within ECD_02166at 2242.311 kb on + strand, within ECD_02166at 2242.311 kb on + strand, within ECD_02166at 2242.312 kb on - strand, within ECD_02166

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
remove
2,239,364 - ECD_02163 0.27 +0.1
2,239,367 + ECD_02163 0.27 -0.4
2,239,368 - ECD_02163 0.27 -1.6
2,239,758 - ECD_02163 0.87 +1.0
2,239,879 - -0.8
2,239,881 - +0.8
2,239,881 - -0.1
2,239,881 - -0.9
2,240,300 - +0.3
2,240,391 + -1.4
2,240,392 - +1.1
2,240,392 - +1.3
2,240,392 - -0.1
2,240,501 + ECD_02165 0.18 -1.3
2,240,535 - ECD_02165 0.21 +1.6
2,240,535 - ECD_02165 0.21 +1.1
2,240,540 - ECD_02165 0.22 +0.5
2,240,583 - ECD_02165 0.26 -2.6
2,240,609 - ECD_02165 0.28 +0.3
2,240,609 - ECD_02165 0.28 +2.3
2,240,615 - ECD_02165 0.29 +2.4
2,241,077 - ECD_02165 0.72 -1.8
2,241,200 - ECD_02165 0.83 +3.1
2,241,243 - ECD_02165 0.87 -1.6
2,241,331 - +2.9
2,241,331 - -1.7
2,241,333 - +1.1
2,241,333 - +2.0
2,241,333 - +0.5
2,241,333 - -3.5
2,241,333 - -0.3
2,241,410 - -2.1
2,241,528 - ECD_02166 0.11 +0.5
2,241,598 - ECD_02166 0.16 +1.4
2,241,660 - ECD_02166 0.20 +0.2
2,241,660 - ECD_02166 0.20 -0.7
2,241,685 - ECD_02166 0.22 -2.1
2,241,851 + ECD_02166 0.34 -0.6
2,241,860 + ECD_02166 0.35 -2.3
2,241,877 - ECD_02166 0.36 -1.4
2,241,947 + ECD_02166 0.41 -1.0
2,242,001 + ECD_02166 0.45 -1.0
2,242,002 - ECD_02166 0.45 +0.3
2,242,170 + ECD_02166 0.58 -2.3
2,242,171 - ECD_02166 0.58 +0.2
2,242,171 - ECD_02166 0.58 +0.3
2,242,171 - ECD_02166 0.58 -0.4
2,242,172 + ECD_02166 0.58 +1.1
2,242,172 + ECD_02166 0.58 -0.3
2,242,311 + ECD_02166 0.68 -2.5
2,242,311 + ECD_02166 0.68 -1.2
2,242,312 - ECD_02166 0.68 +0.2

Or see this region's nucleotide sequence