Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02090 and ECD_02091 are separated by 99 nucleotides ECD_02091 and ECD_02092 are separated by 168 nucleotides ECD_02092 and ECD_02093 are separated by 70 nucleotides
ECD_02090: ECD_02090 - nucleoside permease, at 2,147,743 to 2,148,993
_02090
ECD_02091: ECD_02091 - ribonucleoside hydrolase 2, at 2,149,093 to 2,150,034
_02091
ECD_02092: ECD_02092 - putative transcriptional regulator, at 2,150,203 to 2,150,862
_02092
ECD_02093: ECD_02093 - putative nucleoside transporter, at 2,150,933 to 2,152,183
_02093
Position (kb)
2149
2150
2151 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2148.156 kb on + strand, within ECD_02090 at 2148.587 kb on - strand, within ECD_02090 at 2148.602 kb on - strand, within ECD_02090 at 2148.765 kb on + strand, within ECD_02090 at 2148.765 kb on + strand, within ECD_02090 at 2148.994 kb on - strand at 2148.997 kb on + strand at 2148.998 kb on - strand at 2149.084 kb on + strand at 2149.084 kb on + strand at 2149.095 kb on - strand at 2149.159 kb on - strand at 2149.259 kb on + strand, within ECD_02091 at 2149.260 kb on - strand, within ECD_02091 at 2149.570 kb on - strand, within ECD_02091 at 2149.630 kb on - strand, within ECD_02091 at 2150.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 2,148,156 + ECD_02090 0.33 +0.4 2,148,587 - ECD_02090 0.67 -1.6 2,148,602 - ECD_02090 0.69 -2.9 2,148,765 + ECD_02090 0.82 -1.0 2,148,765 + ECD_02090 0.82 -1.5 2,148,994 - -0.1 2,148,997 + -2.1 2,148,998 - +1.1 2,149,084 + -2.0 2,149,084 + +0.6 2,149,095 - +1.2 2,149,159 - -0.9 2,149,259 + ECD_02091 0.18 +1.3 2,149,260 - ECD_02091 0.18 +1.2 2,149,570 - ECD_02091 0.51 +1.9 2,149,630 - ECD_02091 0.57 +0.9 2,150,111 + -0.7
Or see this region's nucleotide sequence