Strain Fitness in Escherichia coli BL21 around ECD_02052

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02051 and ECD_02052 are separated by 124 nucleotidesECD_02052 and ECD_02053 are separated by 40 nucleotidesECD_02053 and ECD_02054 are separated by 46 nucleotides ECD_02051: ECD_02051 - hypothetical protein, at 2,103,962 to 2,105,962 _02051 ECD_02052: ECD_02052 - lipoprotein, DUF1307 family, at 2,106,087 to 2,106,548 _02052 ECD_02053: ECD_02053 - DUF1456 family protein, at 2,106,589 to 2,107,059 _02053 ECD_02054: ECD_02054 - putative response regulator in two-component system withYehU, at 2,107,106 to 2,107,825 _02054 Position (kb) 2106 2107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2105.315 kb on + strand, within ECD_02051at 2105.371 kb on - strand, within ECD_02051at 2105.443 kb on - strand, within ECD_02051at 2105.746 kb on + strand, within ECD_02051at 2105.792 kb on - strandat 2106.027 kb on - strandat 2106.032 kb on - strandat 2106.101 kb on + strandat 2106.219 kb on + strand, within ECD_02052at 2106.219 kb on + strand, within ECD_02052at 2106.219 kb on + strand, within ECD_02052at 2106.226 kb on - strand, within ECD_02052at 2106.245 kb on + strand, within ECD_02052at 2106.494 kb on + strand, within ECD_02052at 2106.991 kb on - strand, within ECD_02053at 2107.025 kb on + strandat 2107.026 kb on - strandat 2107.055 kb on - strandat 2107.055 kb on - strandat 2107.335 kb on + strand, within ECD_02054at 2107.336 kb on - strand, within ECD_02054

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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2,105,315 + ECD_02051 0.68 +1.0
2,105,371 - ECD_02051 0.70 -1.2
2,105,443 - ECD_02051 0.74 +1.0
2,105,746 + ECD_02051 0.89 -2.2
2,105,792 - +1.5
2,106,027 - -2.0
2,106,032 - -2.8
2,106,101 + +0.2
2,106,219 + ECD_02052 0.29 +1.2
2,106,219 + ECD_02052 0.29 +1.0
2,106,219 + ECD_02052 0.29 -0.5
2,106,226 - ECD_02052 0.30 -0.4
2,106,245 + ECD_02052 0.34 -2.2
2,106,494 + ECD_02052 0.88 -2.3
2,106,991 - ECD_02053 0.85 -0.2
2,107,025 + -1.2
2,107,026 - +1.5
2,107,055 - +1.9
2,107,055 - -1.4
2,107,335 + ECD_02054 0.32 -1.3
2,107,336 - ECD_02054 0.32 -2.0

Or see this region's nucleotide sequence