Strain Fitness in Escherichia coli BL21 around ECD_01929

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01927 and ECD_01928 overlap by 7 nucleotidesECD_01928 and ECD_01929 are separated by 95 nucleotidesECD_01929 and ECD_01930 are separated by 145 nucleotides ECD_01927: ECD_01927 - imidazole glycerol phosphate synthase, catalytic subunit with HisH, at 1,991,647 to 1,992,423 _01927 ECD_01928: ECD_01928 - phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase, at 1,992,417 to 1,993,028 _01928 ECD_01929: ECD_01929 - regulator of length of O-antigen component of lipopolysaccharide chains, at 1,993,124 to 1,994,104 _01929 ECD_01930: ECD_01930 - UDP-glucose 6-dehydrogenase, at 1,994,250 to 1,995,416 _01930 Position (kb) 1993 1994 1995Strain fitness (log2 ratio) -2 -1 0 1 2at 1992.416 kb on + strandat 1992.791 kb on + strand, within ECD_01928at 1992.816 kb on + strand, within ECD_01928at 1992.904 kb on + strand, within ECD_01928at 1993.263 kb on - strand, within ECD_01929at 1993.342 kb on - strand, within ECD_01929at 1993.382 kb on - strand, within ECD_01929at 1993.382 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.436 kb on - strand, within ECD_01929at 1993.654 kb on - strand, within ECD_01929at 1993.699 kb on - strand, within ECD_01929at 1993.730 kb on - strand, within ECD_01929at 1993.821 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.868 kb on - strand, within ECD_01929at 1993.886 kb on - strand, within ECD_01929at 1993.886 kb on - strand, within ECD_01929at 1994.175 kb on - strandat 1994.228 kb on - strandat 1994.414 kb on - strand, within ECD_01930at 1994.414 kb on - strand, within ECD_01930at 1994.445 kb on - strand, within ECD_01930at 1994.445 kb on - strand, within ECD_01930at 1994.445 kb on - strand, within ECD_01930at 1994.513 kb on - strand, within ECD_01930at 1994.624 kb on - strand, within ECD_01930at 1994.635 kb on - strand, within ECD_01930at 1994.646 kb on - strand, within ECD_01930at 1994.663 kb on - strand, within ECD_01930at 1994.693 kb on - strand, within ECD_01930at 1994.706 kb on - strand, within ECD_01930at 1994.768 kb on - strand, within ECD_01930at 1994.772 kb on - strand, within ECD_01930at 1994.946 kb on - strand, within ECD_01930at 1994.946 kb on - strand, within ECD_01930at 1994.946 kb on - strand, within ECD_01930at 1994.946 kb on - strand, within ECD_01930

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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1,992,416 + -0.9
1,992,791 + ECD_01928 0.61 +0.8
1,992,816 + ECD_01928 0.65 +1.8
1,992,904 + ECD_01928 0.80 +0.6
1,993,263 - ECD_01929 0.14 -1.9
1,993,342 - ECD_01929 0.22 +2.2
1,993,382 - ECD_01929 0.26 +0.6
1,993,382 - ECD_01929 0.26 -0.6
1,993,424 - ECD_01929 0.31 +2.3
1,993,424 - ECD_01929 0.31 -0.1
1,993,424 - ECD_01929 0.31 +0.6
1,993,436 - ECD_01929 0.32 -0.5
1,993,654 - ECD_01929 0.54 +1.2
1,993,699 - ECD_01929 0.59 +0.9
1,993,730 - ECD_01929 0.62 -2.0
1,993,821 - ECD_01929 0.71 -0.7
1,993,864 - ECD_01929 0.75 +0.5
1,993,864 - ECD_01929 0.75 -0.8
1,993,864 - ECD_01929 0.75 +1.4
1,993,868 - ECD_01929 0.76 +0.8
1,993,886 - ECD_01929 0.78 -0.2
1,993,886 - ECD_01929 0.78 -1.3
1,994,175 - -0.2
1,994,228 - +1.1
1,994,414 - ECD_01930 0.14 +1.1
1,994,414 - ECD_01930 0.14 +0.9
1,994,445 - ECD_01930 0.17 -0.5
1,994,445 - ECD_01930 0.17 -0.1
1,994,445 - ECD_01930 0.17 +1.3
1,994,513 - ECD_01930 0.23 +1.1
1,994,624 - ECD_01930 0.32 -1.2
1,994,635 - ECD_01930 0.33 +2.1
1,994,646 - ECD_01930 0.34 +0.9
1,994,663 - ECD_01930 0.35 -2.4
1,994,693 - ECD_01930 0.38 +0.7
1,994,706 - ECD_01930 0.39 +0.6
1,994,768 - ECD_01930 0.44 -0.2
1,994,772 - ECD_01930 0.45 +1.4
1,994,946 - ECD_01930 0.60 +1.9
1,994,946 - ECD_01930 0.60 +0.7
1,994,946 - ECD_01930 0.60 -0.5
1,994,946 - ECD_01930 0.60 +0.2

Or see this region's nucleotide sequence