Strain Fitness in Escherichia coli BL21 around ECD_01793

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01791 and ECD_01792 overlap by 4 nucleotidesECD_01792 and ECD_01793 are separated by 165 nucleotidesECD_01793 and ECD_01794 are separated by 12 nucleotidesECD_01794 and ECD_01795 are separated by 668 nucleotides ECD_01791: ECD_01791 - putative Mn(2+) efflux pump, mntR-regulated, at 1,851,415 to 1,851,981 _01791 ECD_01792: ECD_01792 - 23S rRNA m(1)G745 methyltransferase, SAM-dependent, at 1,851,978 to 1,852,787 _01792 ECD_01793: ECD_01793 - stress protein, member of the CspA-family, at 1,852,953 to 1,853,162 _01793 ECD_01794: ECD_01794 - DUF2527 family heat-induced protein, at 1,853,175 to 1,853,318 _01794 ECD_01795: ECD_01795 - putative inner membrane protein, at 1,853,987 to 1,854,274 _01795 Position (kb) 1852 1853 1854Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1852.493 kb on - strand, within ECD_01792at 1852.496 kb on - strand, within ECD_01792at 1852.603 kb on - strand, within ECD_01792at 1852.687 kb on + strand, within ECD_01792at 1852.732 kb on + strandat 1852.733 kb on - strandat 1852.733 kb on - strandat 1852.733 kb on - strandat 1852.733 kb on - strandat 1852.881 kb on - strandat 1852.881 kb on - strandat 1852.926 kb on - strandat 1852.926 kb on - strandat 1852.959 kb on - strandat 1852.959 kb on - strandat 1852.966 kb on - strandat 1853.071 kb on - strand, within ECD_01793at 1853.071 kb on - strand, within ECD_01793at 1853.121 kb on - strand, within ECD_01793at 1853.203 kb on - strand, within ECD_01794at 1853.212 kb on - strand, within ECD_01794at 1853.212 kb on - strand, within ECD_01794at 1853.244 kb on - strand, within ECD_01794at 1853.244 kb on - strand, within ECD_01794at 1853.244 kb on - strand, within ECD_01794at 1853.246 kb on - strand, within ECD_01794at 1853.246 kb on - strand, within ECD_01794at 1853.319 kb on - strandat 1853.449 kb on - strandat 1853.581 kb on - strandat 1854.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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1,852,493 - ECD_01792 0.64 +0.7
1,852,496 - ECD_01792 0.64 -1.0
1,852,603 - ECD_01792 0.77 -0.0
1,852,687 + ECD_01792 0.88 -0.3
1,852,732 + -1.6
1,852,733 - -1.2
1,852,733 - +1.7
1,852,733 - +1.9
1,852,733 - -1.2
1,852,881 - +0.2
1,852,881 - -2.5
1,852,926 - +0.2
1,852,926 - +1.8
1,852,959 - +1.6
1,852,959 - +1.9
1,852,966 - +1.2
1,853,071 - ECD_01793 0.56 +2.1
1,853,071 - ECD_01793 0.56 +1.2
1,853,121 - ECD_01793 0.80 +1.1
1,853,203 - ECD_01794 0.19 +0.3
1,853,212 - ECD_01794 0.26 +1.0
1,853,212 - ECD_01794 0.26 -1.2
1,853,244 - ECD_01794 0.48 +2.7
1,853,244 - ECD_01794 0.48 +0.4
1,853,244 - ECD_01794 0.48 +0.5
1,853,246 - ECD_01794 0.49 +0.4
1,853,246 - ECD_01794 0.49 +1.6
1,853,319 - -0.2
1,853,449 - +2.9
1,853,581 - +2.4
1,854,014 - -0.1

Or see this region's nucleotide sequence