Strain Fitness in Escherichia coli BL21 around ECD_01556

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01554 and ECD_01555 are separated by 107 nucleotidesECD_01555 and ECD_01556 are separated by 198 nucleotidesECD_01556 and ECD_01557 are separated by 60 nucleotides ECD_01554: ECD_01554 - UPF0257 family lipoprotein, at 1,601,944 to 1,602,654 _01554 ECD_01555: ECD_01555 - DUF1161 family periplasmic protein, at 1,602,762 to 1,603,067 _01555 ECD_01556: ECD_01556 - putative selenate reductase, periplasmic, at 1,603,266 to 1,605,692 _01556 ECD_01557: ECD_01557 - S- and N-oxide reductase, A subunit, periplasmic, at 1,605,753 to 1,608,176 _01557 Position (kb) 1603 1604 1605 1606Strain fitness (log2 ratio) -1 0 1 2 3at 1603.135 kb on - strandat 1603.135 kb on - strandat 1604.376 kb on + strand, within ECD_01556at 1605.031 kb on - strand, within ECD_01556at 1605.665 kb on + strandat 1605.935 kb on + strandat 1606.150 kb on + strand, within ECD_01557at 1606.332 kb on + strand, within ECD_01557at 1606.672 kb on - strand, within ECD_01557

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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1,603,135 - +2.1
1,603,135 - +0.8
1,604,376 + ECD_01556 0.46 -0.6
1,605,031 - ECD_01556 0.73 +1.0
1,605,665 + -1.5
1,605,935 + +3.0
1,606,150 + ECD_01557 0.16 -0.5
1,606,332 + ECD_01557 0.24 +2.0
1,606,672 - ECD_01557 0.38 -0.2

Or see this region's nucleotide sequence