Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01172 and ECD_01173 are separated by 319 nucleotides ECD_01173 and ECD_01174 are separated by 10 nucleotides ECD_01174 and ECD_01175 are separated by 10 nucleotides
ECD_01172: ECD_01172 - periplasmic trehalase, at 1,233,827 to 1,235,524
_01172
ECD_01173: ECD_01173 - putative dihydroxyacetone-specific PTS enzymes: HPr, EI components, at 1,235,844 to 1,237,262
_01173
ECD_01174: ECD_01174 - dihydroxyacetone kinase, C-terminal domain, at 1,237,273 to 1,237,905
_01174
ECD_01175: ECD_01175 - dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit, at 1,237,916 to 1,238,986
_01175
Position (kb)
1235
1236
1237
1238 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1235.055 kb on + strand, within ECD_01172 at 1235.088 kb on + strand, within ECD_01172 at 1235.470 kb on + strand at 1236.006 kb on - strand, within ECD_01173 at 1236.013 kb on - strand, within ECD_01173 at 1236.072 kb on - strand, within ECD_01173 at 1236.084 kb on - strand, within ECD_01173 at 1236.156 kb on - strand, within ECD_01173 at 1236.298 kb on - strand, within ECD_01173 at 1236.306 kb on - strand, within ECD_01173 at 1236.624 kb on - strand, within ECD_01173 at 1236.731 kb on - strand, within ECD_01173 at 1237.236 kb on - strand at 1237.246 kb on - strand at 1237.309 kb on - strand at 1237.309 kb on - strand at 1237.396 kb on - strand, within ECD_01174 at 1237.402 kb on - strand, within ECD_01174 at 1237.402 kb on - strand, within ECD_01174 at 1237.783 kb on - strand, within ECD_01174 at 1238.015 kb on - strand at 1238.048 kb on - strand, within ECD_01175
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 1,235,055 + ECD_01172 0.72 +1.3 1,235,088 + ECD_01172 0.74 +0.5 1,235,470 + +0.9 1,236,006 - ECD_01173 0.11 -0.0 1,236,013 - ECD_01173 0.12 +2.9 1,236,072 - ECD_01173 0.16 +3.5 1,236,084 - ECD_01173 0.17 +3.0 1,236,156 - ECD_01173 0.22 +2.3 1,236,298 - ECD_01173 0.32 +2.0 1,236,306 - ECD_01173 0.33 +1.5 1,236,624 - ECD_01173 0.55 +0.9 1,236,731 - ECD_01173 0.63 +1.7 1,237,236 - +1.0 1,237,246 - +1.2 1,237,309 - +1.5 1,237,309 - -1.0 1,237,396 - ECD_01174 0.19 +1.8 1,237,402 - ECD_01174 0.20 -0.3 1,237,402 - ECD_01174 0.20 +1.3 1,237,783 - ECD_01174 0.81 -1.7 1,238,015 - -0.4 1,238,048 - ECD_01175 0.12 +1.3
Or see this region's nucleotide sequence