Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00875 and ECD_00876 are separated by 36 nucleotides ECD_00876 and ECD_00877 are separated by 132 nucleotides
ECD_00875: ECD_00875 - L-allo-threonine aldolase, PLP-dependent, at 912,997 to 913,998
_00875
ECD_00876: ECD_00876 - pyruvate dehydrogenase, thiamine triphosphate-binding, FAD-binding, at 914,035 to 915,753
_00876
ECD_00877: ECD_00877 - HCP oxidoreductase, NADH-dependent, at 915,886 to 916,854
_00877
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 913.122 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.173 kb on + strand, within ECD_00875 at 913.173 kb on + strand, within ECD_00875 at 913.174 kb on - strand, within ECD_00875 at 913.267 kb on - strand, within ECD_00875 at 913.280 kb on + strand, within ECD_00875 at 913.281 kb on - strand, within ECD_00875 at 913.281 kb on - strand, within ECD_00875 at 913.357 kb on - strand, within ECD_00875 at 913.439 kb on + strand, within ECD_00875 at 913.469 kb on + strand, within ECD_00875 at 913.770 kb on + strand, within ECD_00875 at 913.771 kb on - strand, within ECD_00875 at 913.772 kb on + strand, within ECD_00875 at 913.772 kb on + strand, within ECD_00875 at 913.773 kb on - strand, within ECD_00875 at 913.773 kb on - strand, within ECD_00875 at 913.891 kb on - strand, within ECD_00875 at 914.013 kb on - strand at 914.013 kb on - strand at 914.106 kb on + strand at 914.106 kb on + strand at 914.107 kb on - strand at 914.109 kb on - strand at 914.115 kb on + strand at 914.309 kb on - strand, within ECD_00876 at 914.581 kb on + strand, within ECD_00876 at 914.631 kb on + strand, within ECD_00876 at 915.018 kb on - strand, within ECD_00876 at 915.182 kb on - strand, within ECD_00876 at 915.334 kb on + strand, within ECD_00876 at 915.394 kb on + strand, within ECD_00876 at 915.511 kb on + strand, within ECD_00876 at 915.731 kb on + strand at 915.879 kb on - strand at 915.985 kb on - strand, within ECD_00877 at 915.986 kb on + strand, within ECD_00877 at 915.987 kb on - strand, within ECD_00877 at 916.237 kb on - strand, within ECD_00877 at 916.276 kb on + strand, within ECD_00877 at 916.276 kb on + strand, within ECD_00877 at 916.372 kb on - strand, within ECD_00877 at 916.393 kb on - strand, within ECD_00877 at 916.543 kb on - strand, within ECD_00877 at 916.574 kb on + strand, within ECD_00877 at 916.652 kb on + strand, within ECD_00877 at 916.653 kb on - strand, within ECD_00877 at 916.685 kb on + strand, within ECD_00877 at 916.686 kb on - strand, within ECD_00877 at 916.751 kb on + strand, within ECD_00877 at 916.752 kb on - strand, within ECD_00877
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 913,122 - ECD_00875 0.12 -0.2 913,171 - ECD_00875 0.17 +0.5 913,171 - ECD_00875 0.17 -2.1 913,171 - ECD_00875 0.17 +0.9 913,171 - ECD_00875 0.17 +2.4 913,171 - ECD_00875 0.17 +1.9 913,173 + ECD_00875 0.18 +0.0 913,173 + ECD_00875 0.18 -1.9 913,174 - ECD_00875 0.18 +2.1 913,267 - ECD_00875 0.27 +1.5 913,280 + ECD_00875 0.28 +0.7 913,281 - ECD_00875 0.28 -2.8 913,281 - ECD_00875 0.28 +0.8 913,357 - ECD_00875 0.36 +1.4 913,439 + ECD_00875 0.44 +0.6 913,469 + ECD_00875 0.47 +1.9 913,770 + ECD_00875 0.77 -1.0 913,771 - ECD_00875 0.77 -0.5 913,772 + ECD_00875 0.77 -2.4 913,772 + ECD_00875 0.77 +0.9 913,773 - ECD_00875 0.77 -1.1 913,773 - ECD_00875 0.77 +1.6 913,891 - ECD_00875 0.89 -0.1 914,013 - +0.2 914,013 - +0.9 914,106 + +2.6 914,106 + +0.8 914,107 - -0.2 914,109 - +0.8 914,115 + -1.8 914,309 - ECD_00876 0.16 +2.2 914,581 + ECD_00876 0.32 +2.4 914,631 + ECD_00876 0.35 -2.0 915,018 - ECD_00876 0.57 -1.5 915,182 - ECD_00876 0.67 -2.3 915,334 + ECD_00876 0.76 +1.5 915,394 + ECD_00876 0.79 -1.1 915,511 + ECD_00876 0.86 +0.1 915,731 + +0.3 915,879 - +1.6 915,985 - ECD_00877 0.10 +1.0 915,986 + ECD_00877 0.10 +0.5 915,987 - ECD_00877 0.10 +1.3 916,237 - ECD_00877 0.36 +1.0 916,276 + ECD_00877 0.40 +1.9 916,276 + ECD_00877 0.40 -1.1 916,372 - ECD_00877 0.50 -1.0 916,393 - ECD_00877 0.52 +0.7 916,543 - ECD_00877 0.68 +0.0 916,574 + ECD_00877 0.71 +3.0 916,652 + ECD_00877 0.79 -0.4 916,653 - ECD_00877 0.79 +1.5 916,685 + ECD_00877 0.82 +0.6 916,686 - ECD_00877 0.83 +2.2 916,751 + ECD_00877 0.89 +1.0 916,752 - ECD_00877 0.89 -0.8
Or see this region's nucleotide sequence