Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00536 and ECD_00537 are separated by 101 nucleotides ECD_00537 and ECD_00538 are separated by 67 nucleotides
ECD_00536: ECD_00536 - copper/silver efflux system, membrane component, at 557,396 to 560,539
_00536
ECD_00537: ECD_00537 - phenylalanine transporter, at 560,641 to 562,017
_00537
ECD_00538: ECD_00538 - mechanosensitive channel protein, miniconductance, at 562,085 to 563,332
_00538
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 559.868 kb on + strand, within ECD_00536 at 560.005 kb on + strand, within ECD_00536 at 560.006 kb on - strand, within ECD_00536 at 560.057 kb on + strand, within ECD_00536 at 560.057 kb on + strand, within ECD_00536 at 560.057 kb on + strand, within ECD_00536 at 560.058 kb on - strand, within ECD_00536 at 560.095 kb on + strand, within ECD_00536 at 560.234 kb on + strand at 560.234 kb on + strand at 560.234 kb on + strand at 560.235 kb on - strand at 560.235 kb on - strand at 560.238 kb on + strand at 560.250 kb on + strand at 560.313 kb on + strand at 560.313 kb on + strand at 560.313 kb on + strand at 560.315 kb on + strand at 560.315 kb on + strand at 560.316 kb on - strand at 560.482 kb on + strand at 560.500 kb on + strand at 560.708 kb on + strand at 560.708 kb on + strand at 560.709 kb on - strand at 560.712 kb on + strand at 560.712 kb on + strand at 560.755 kb on - strand at 561.013 kb on + strand, within ECD_00537 at 561.013 kb on + strand, within ECD_00537 at 561.014 kb on - strand, within ECD_00537 at 561.107 kb on + strand, within ECD_00537 at 561.108 kb on - strand, within ECD_00537 at 561.108 kb on - strand, within ECD_00537 at 561.109 kb on + strand, within ECD_00537 at 561.163 kb on - strand, within ECD_00537 at 561.294 kb on + strand, within ECD_00537 at 561.294 kb on + strand, within ECD_00537 at 561.789 kb on + strand, within ECD_00537 at 561.855 kb on + strand, within ECD_00537 at 561.884 kb on - strand at 561.939 kb on + strand at 561.977 kb on + strand at 561.978 kb on - strand at 562.093 kb on + strand at 562.175 kb on + strand at 562.176 kb on - strand at 562.287 kb on - strand, within ECD_00538 at 562.301 kb on - strand, within ECD_00538 at 562.364 kb on - strand, within ECD_00538 at 562.400 kb on - strand, within ECD_00538 at 562.449 kb on - strand, within ECD_00538 at 562.733 kb on - strand, within ECD_00538 at 562.754 kb on - strand, within ECD_00538 at 562.754 kb on - strand, within ECD_00538 at 562.783 kb on + strand, within ECD_00538 at 562.784 kb on - strand, within ECD_00538 at 562.914 kb on - strand, within ECD_00538 at 562.970 kb on - strand, within ECD_00538
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 559,868 + ECD_00536 0.79 +0.7 560,005 + ECD_00536 0.83 +2.2 560,006 - ECD_00536 0.83 -1.3 560,057 + ECD_00536 0.85 +3.4 560,057 + ECD_00536 0.85 +3.4 560,057 + ECD_00536 0.85 +0.3 560,058 - ECD_00536 0.85 +1.8 560,095 + ECD_00536 0.86 -0.1 560,234 + -0.9 560,234 + -0.5 560,234 + -0.9 560,235 - +1.0 560,235 - -1.2 560,238 + +0.4 560,250 + +0.8 560,313 + +0.7 560,313 + -1.3 560,313 + -1.4 560,315 + -1.8 560,315 + -2.2 560,316 - +2.6 560,482 + +0.8 560,500 + +1.4 560,708 + +0.1 560,708 + +0.9 560,709 - -1.0 560,712 + -0.9 560,712 + +1.0 560,755 - -1.3 561,013 + ECD_00537 0.27 +2.7 561,013 + ECD_00537 0.27 +0.6 561,014 - ECD_00537 0.27 +0.5 561,107 + ECD_00537 0.34 -1.1 561,108 - ECD_00537 0.34 +1.2 561,108 - ECD_00537 0.34 +1.4 561,109 + ECD_00537 0.34 +1.3 561,163 - ECD_00537 0.38 -1.3 561,294 + ECD_00537 0.47 +0.5 561,294 + ECD_00537 0.47 +1.8 561,789 + ECD_00537 0.83 +0.2 561,855 + ECD_00537 0.88 +1.0 561,884 - -0.4 561,939 + +1.2 561,977 + -1.2 561,978 - -0.2 562,093 + -1.1 562,175 + +0.6 562,176 - +1.6 562,287 - ECD_00538 0.16 +0.4 562,301 - ECD_00538 0.17 -1.8 562,364 - ECD_00538 0.22 +1.4 562,400 - ECD_00538 0.25 +0.2 562,449 - ECD_00538 0.29 -0.3 562,733 - ECD_00538 0.52 -2.2 562,754 - ECD_00538 0.54 -0.0 562,754 - ECD_00538 0.54 +1.4 562,783 + ECD_00538 0.56 -1.8 562,784 - ECD_00538 0.56 +1.8 562,914 - ECD_00538 0.66 +1.6 562,970 - ECD_00538 0.71 +1.0
Or see this region's nucleotide sequence