Strain Fitness in Escherichia coli BL21 around ECD_00436

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00435 and ECD_00436 are separated by 261 nucleotidesECD_00436 and ECD_00437 are separated by 2 nucleotides ECD_00435: ECD_00435 - copper transporter, at 478,022 to 480,526 _00435 ECD_00436: ECD_00436 - glutaminase 1, at 480,788 to 481,720 _00436 ECD_00437: ECD_00437 - putative amino acid transporter, at 481,723 to 483,015 _00437 Position (kb) 480 481 482Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 480.115 kb on + strand, within ECD_00435at 480.526 kb on + strandat 480.527 kb on - strandat 480.540 kb on - strandat 480.792 kb on + strandat 480.872 kb on + strandat 480.894 kb on + strand, within ECD_00436at 480.894 kb on + strand, within ECD_00436at 480.895 kb on - strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 481.098 kb on + strand, within ECD_00436at 481.206 kb on + strand, within ECD_00436at 481.240 kb on - strand, within ECD_00436at 481.314 kb on - strand, within ECD_00436at 481.331 kb on + strand, within ECD_00436at 481.332 kb on - strand, within ECD_00436at 481.361 kb on + strand, within ECD_00436at 481.362 kb on - strand, within ECD_00436at 481.390 kb on + strand, within ECD_00436at 481.391 kb on - strand, within ECD_00436at 481.484 kb on + strand, within ECD_00436at 481.517 kb on + strand, within ECD_00436at 481.700 kb on + strandat 481.701 kb on - strandat 481.702 kb on + strandat 481.711 kb on + strandat 481.712 kb on - strandat 481.740 kb on + strandat 481.740 kb on + strandat 481.844 kb on + strandat 481.913 kb on - strand, within ECD_00437at 481.934 kb on - strand, within ECD_00437at 482.068 kb on + strand, within ECD_00437at 482.165 kb on + strand, within ECD_00437at 482.271 kb on + strand, within ECD_00437at 482.316 kb on + strand, within ECD_00437at 482.443 kb on + strand, within ECD_00437at 482.443 kb on + strand, within ECD_00437at 482.443 kb on + strand, within ECD_00437at 482.444 kb on - strand, within ECD_00437at 482.676 kb on + strand, within ECD_00437at 482.698 kb on - strand, within ECD_00437at 482.698 kb on - strand, within ECD_00437

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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480,115 + ECD_00435 0.84 +0.7
480,526 + +0.5
480,527 - -0.6
480,540 - +1.0
480,792 + -0.5
480,872 + +1.3
480,894 + ECD_00436 0.11 -1.1
480,894 + ECD_00436 0.11 -1.8
480,895 - ECD_00436 0.11 -3.6
480,944 + ECD_00436 0.17 -2.7
480,944 + ECD_00436 0.17 +1.2
480,944 + ECD_00436 0.17 +1.1
481,098 + ECD_00436 0.33 +1.6
481,206 + ECD_00436 0.45 +2.7
481,240 - ECD_00436 0.48 -0.3
481,314 - ECD_00436 0.56 -0.6
481,331 + ECD_00436 0.58 +1.1
481,332 - ECD_00436 0.58 +0.4
481,361 + ECD_00436 0.61 -2.8
481,362 - ECD_00436 0.62 -1.3
481,390 + ECD_00436 0.65 +0.5
481,391 - ECD_00436 0.65 -1.2
481,484 + ECD_00436 0.75 +0.3
481,517 + ECD_00436 0.78 +2.0
481,700 + +0.2
481,701 - -0.7
481,702 + -2.1
481,711 + +1.3
481,712 - +0.8
481,740 + -2.1
481,740 + -1.7
481,844 + +2.6
481,913 - ECD_00437 0.15 +0.3
481,934 - ECD_00437 0.16 +0.2
482,068 + ECD_00437 0.27 +1.7
482,165 + ECD_00437 0.34 +1.8
482,271 + ECD_00437 0.42 +0.4
482,316 + ECD_00437 0.46 -2.3
482,443 + ECD_00437 0.56 -0.0
482,443 + ECD_00437 0.56 -2.7
482,443 + ECD_00437 0.56 -1.4
482,444 - ECD_00437 0.56 -0.1
482,676 + ECD_00437 0.74 -0.6
482,698 - ECD_00437 0.75 -1.2
482,698 - ECD_00437 0.75 -0.4

Or see this region's nucleotide sequence