Strain Fitness in Escherichia coli BL21 around ECD_00375

Experiment: lambda1857_phage_12.5_MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00373 and ECD_00374 are separated by 167 nucleotidesECD_00374 and ECD_00375 are separated by 127 nucleotidesECD_00375 and ECD_00376 are separated by 416 nucleotides ECD_00373: ECD_00373 - 2-dehydropantoate reductase, NADPH-specific, at 409,005 to 409,916 _00373 ECD_00374: ECD_00374 - phage Phi6 host factor, ATP/GTP binding protein, at 410,084 to 410,575 _00374 ECD_00375: ECD_00375 - putative transporter, at 410,703 to 412,067 _00375 ECD_00376: ECD_00376 - hypothetical protein, at 412,484 to 413,419 _00376 Position (kb) 410 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 409.806 kb on - strand, within ECD_00373at 409.875 kb on + strandat 409.876 kb on - strandat 409.876 kb on - strandat 409.954 kb on - strandat 409.966 kb on + strandat 409.998 kb on + strandat 410.523 kb on + strand, within ECD_00374at 410.660 kb on + strandat 410.768 kb on - strandat 410.836 kb on - strandat 410.891 kb on - strand, within ECD_00375at 411.041 kb on - strand, within ECD_00375at 411.041 kb on - strand, within ECD_00375at 411.041 kb on - strand, within ECD_00375at 411.065 kb on - strand, within ECD_00375at 411.089 kb on + strand, within ECD_00375at 411.089 kb on + strand, within ECD_00375at 411.259 kb on + strand, within ECD_00375at 411.260 kb on - strand, within ECD_00375at 411.260 kb on - strand, within ECD_00375at 411.352 kb on - strand, within ECD_00375at 411.378 kb on - strand, within ECD_00375at 411.404 kb on + strand, within ECD_00375at 411.404 kb on + strand, within ECD_00375at 411.404 kb on + strand, within ECD_00375at 411.405 kb on - strand, within ECD_00375at 411.405 kb on - strand, within ECD_00375at 411.485 kb on + strand, within ECD_00375at 411.485 kb on + strand, within ECD_00375at 411.485 kb on + strand, within ECD_00375at 411.489 kb on + strand, within ECD_00375at 411.490 kb on - strand, within ECD_00375at 411.490 kb on - strand, within ECD_00375at 411.490 kb on - strand, within ECD_00375at 411.500 kb on + strand, within ECD_00375at 411.501 kb on - strand, within ECD_00375at 411.501 kb on - strand, within ECD_00375at 411.552 kb on - strand, within ECD_00375at 411.738 kb on + strand, within ECD_00375at 411.829 kb on - strand, within ECD_00375at 411.898 kb on + strand, within ECD_00375at 411.899 kb on - strand, within ECD_00375at 411.921 kb on + strand, within ECD_00375at 412.094 kb on + strandat 412.100 kb on - strandat 412.152 kb on + strandat 412.481 kb on + strandat 412.575 kb on + strandat 412.671 kb on - strand, within ECD_00376at 412.782 kb on - strand, within ECD_00376at 412.823 kb on + strand, within ECD_00376at 412.830 kb on + strand, within ECD_00376at 412.885 kb on + strand, within ECD_00376at 412.885 kb on + strand, within ECD_00376at 412.889 kb on + strand, within ECD_00376at 412.905 kb on - strand, within ECD_00376

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Per-strain Table

Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI
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409,806 - ECD_00373 0.88 +1.0
409,875 + +1.3
409,876 - +2.6
409,876 - +1.0
409,954 - -3.7
409,966 + +0.7
409,998 + -0.1
410,523 + ECD_00374 0.89 +0.4
410,660 + +0.4
410,768 - -2.7
410,836 - +1.3
410,891 - ECD_00375 0.14 +2.3
411,041 - ECD_00375 0.25 -3.5
411,041 - ECD_00375 0.25 +1.1
411,041 - ECD_00375 0.25 -1.2
411,065 - ECD_00375 0.27 -2.5
411,089 + ECD_00375 0.28 -2.0
411,089 + ECD_00375 0.28 +1.3
411,259 + ECD_00375 0.41 +0.5
411,260 - ECD_00375 0.41 -0.2
411,260 - ECD_00375 0.41 +0.4
411,352 - ECD_00375 0.48 -0.1
411,378 - ECD_00375 0.49 +0.4
411,404 + ECD_00375 0.51 -0.1
411,404 + ECD_00375 0.51 -1.5
411,404 + ECD_00375 0.51 -0.8
411,405 - ECD_00375 0.51 -0.1
411,405 - ECD_00375 0.51 -0.6
411,485 + ECD_00375 0.57 -1.1
411,485 + ECD_00375 0.57 +0.1
411,485 + ECD_00375 0.57 +0.1
411,489 + ECD_00375 0.58 +0.9
411,490 - ECD_00375 0.58 -0.8
411,490 - ECD_00375 0.58 -2.3
411,490 - ECD_00375 0.58 -0.3
411,500 + ECD_00375 0.58 +1.6
411,501 - ECD_00375 0.58 -1.6
411,501 - ECD_00375 0.58 -2.0
411,552 - ECD_00375 0.62 -1.8
411,738 + ECD_00375 0.76 -2.2
411,829 - ECD_00375 0.82 +1.3
411,898 + ECD_00375 0.88 +0.5
411,899 - ECD_00375 0.88 -0.0
411,921 + ECD_00375 0.89 -2.1
412,094 + +0.2
412,100 - -2.4
412,152 + +1.2
412,481 + +1.2
412,575 + +1.3
412,671 - ECD_00376 0.20 -2.1
412,782 - ECD_00376 0.32 -0.6
412,823 + ECD_00376 0.36 -0.9
412,830 + ECD_00376 0.37 +1.7
412,885 + ECD_00376 0.43 +0.1
412,885 + ECD_00376 0.43 +1.3
412,889 + ECD_00376 0.43 -2.6
412,905 - ECD_00376 0.45 -1.3

Or see this region's nucleotide sequence