Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00295 and ECD_00296 are separated by 102 nucleotides ECD_00296 and ECD_00297 are separated by 65 nucleotides ECD_00297 and ECD_00298 are separated by 51 nucleotides
ECD_00295: ECD_00295 - putative cyanate transporter, at 329,527 to 330,681
_00295
ECD_00296: ECD_00296 - thiogalactoside acetyltransferase, at 330,784 to 331,395
_00296
ECD_00297: ECD_00297 - lactose permease, at 331,461 to 332,714
_00297
ECD_00298: ECD_00298 - beta-D-galactosidase, at 332,766 to 335,840
_00298
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 330.558 kb on + strand, within ECD_00295 at 330.575 kb on - strand at 330.729 kb on - strand at 330.765 kb on - strand at 330.957 kb on + strand, within ECD_00296 at 331.013 kb on + strand, within ECD_00296 at 331.013 kb on + strand, within ECD_00296 at 331.163 kb on - strand, within ECD_00296 at 331.287 kb on + strand, within ECD_00296 at 331.570 kb on + strand at 331.601 kb on + strand, within ECD_00297 at 331.602 kb on - strand, within ECD_00297 at 331.602 kb on - strand, within ECD_00297 at 331.623 kb on - strand, within ECD_00297 at 331.703 kb on + strand, within ECD_00297 at 331.707 kb on - strand, within ECD_00297 at 331.707 kb on - strand, within ECD_00297 at 331.709 kb on - strand, within ECD_00297 at 331.808 kb on + strand, within ECD_00297 at 331.808 kb on + strand, within ECD_00297 at 331.821 kb on - strand, within ECD_00297 at 331.824 kb on - strand, within ECD_00297 at 331.902 kb on - strand, within ECD_00297 at 331.974 kb on - strand, within ECD_00297 at 332.008 kb on + strand, within ECD_00297 at 332.009 kb on - strand, within ECD_00297 at 332.009 kb on - strand, within ECD_00297 at 332.220 kb on - strand, within ECD_00297 at 332.381 kb on + strand, within ECD_00297 at 332.381 kb on + strand, within ECD_00297 at 332.710 kb on + strand at 333.052 kb on + strand at 333.061 kb on + strand at 333.061 kb on + strand at 333.061 kb on + strand at 333.061 kb on + strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.062 kb on - strand at 333.138 kb on + strand, within ECD_00298 at 333.288 kb on - strand, within ECD_00298 at 333.291 kb on + strand, within ECD_00298 at 333.353 kb on + strand, within ECD_00298 at 333.354 kb on - strand, within ECD_00298 at 333.428 kb on + strand, within ECD_00298 at 333.454 kb on - strand, within ECD_00298
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 330,558 + ECD_00295 0.89 +0.0 330,575 - +0.2 330,729 - -2.4 330,765 - -0.1 330,957 + ECD_00296 0.28 -2.1 331,013 + ECD_00296 0.37 +0.2 331,013 + ECD_00296 0.37 -2.4 331,163 - ECD_00296 0.62 -1.7 331,287 + ECD_00296 0.82 -0.1 331,570 + +1.6 331,601 + ECD_00297 0.11 -0.1 331,602 - ECD_00297 0.11 +1.1 331,602 - ECD_00297 0.11 +1.2 331,623 - ECD_00297 0.13 -2.4 331,703 + ECD_00297 0.19 +1.9 331,707 - ECD_00297 0.20 -0.7 331,707 - ECD_00297 0.20 -0.0 331,709 - ECD_00297 0.20 +0.3 331,808 + ECD_00297 0.28 -0.0 331,808 + ECD_00297 0.28 +0.1 331,821 - ECD_00297 0.29 -2.5 331,824 - ECD_00297 0.29 +0.2 331,902 - ECD_00297 0.35 -0.1 331,974 - ECD_00297 0.41 -3.1 332,008 + ECD_00297 0.44 +0.7 332,009 - ECD_00297 0.44 -2.4 332,009 - ECD_00297 0.44 -1.9 332,220 - ECD_00297 0.61 -1.1 332,381 + ECD_00297 0.73 -1.3 332,381 + ECD_00297 0.73 -0.2 332,710 + -0.9 333,052 + -1.3 333,061 + -2.1 333,061 + -0.5 333,061 + +0.2 333,061 + -1.1 333,062 - -2.1 333,062 - +0.3 333,062 - -0.0 333,062 - -1.3 333,062 - -1.0 333,062 - -0.8 333,062 - -1.3 333,062 - -1.7 333,138 + ECD_00298 0.12 -0.1 333,288 - ECD_00298 0.17 -0.1 333,291 + ECD_00298 0.17 -1.7 333,353 + ECD_00298 0.19 -0.2 333,354 - ECD_00298 0.19 -0.1 333,428 + ECD_00298 0.22 -1.2 333,454 - ECD_00298 0.22 +1.3
Or see this region's nucleotide sequence