Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00279 and ECD_00280 are separated by 376 nucleotides ECD_00280 and ECD_00281 are separated by 243 nucleotides
ECD_00279: ECD_00279 - putative metallo-dependent hydrolase domain deaminase, at 310,753 to 312,135
_00279
ECD_00280: ECD_00280 - broad specificity NADPH-dependent aldehyde reductase, Zn-containing, at 312,512 to 313,561
_00280
ECD_00281: ECD_00281 - uncharacterized protein, at 313,805 to 314,620
_00281
Position (kb) 312
313
314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 311.617 kb on + strand, within ECD_00279 at 311.617 kb on + strand, within ECD_00279 at 311.618 kb on - strand, within ECD_00279 at 311.618 kb on - strand, within ECD_00279 at 311.618 kb on - strand, within ECD_00279 at 311.618 kb on - strand, within ECD_00279 at 311.618 kb on - strand, within ECD_00279 at 311.711 kb on + strand, within ECD_00279 at 311.751 kb on + strand, within ECD_00279 at 311.751 kb on + strand, within ECD_00279 at 311.784 kb on + strand, within ECD_00279 at 311.863 kb on + strand, within ECD_00279 at 311.864 kb on - strand, within ECD_00279 at 311.899 kb on + strand, within ECD_00279 at 311.911 kb on + strand, within ECD_00279 at 311.912 kb on - strand, within ECD_00279 at 311.912 kb on - strand, within ECD_00279 at 311.969 kb on + strand, within ECD_00279 at 311.970 kb on - strand, within ECD_00279 at 311.970 kb on - strand, within ECD_00279 at 312.072 kb on + strand at 312.073 kb on - strand at 312.165 kb on + strand at 312.165 kb on + strand at 312.168 kb on + strand at 312.168 kb on + strand at 312.177 kb on + strand at 312.177 kb on + strand at 312.206 kb on - strand at 312.233 kb on - strand at 312.266 kb on + strand at 312.274 kb on + strand at 312.274 kb on + strand at 312.321 kb on + strand at 312.334 kb on + strand at 312.343 kb on + strand at 312.423 kb on + strand at 312.427 kb on + strand at 312.434 kb on + strand at 312.434 kb on + strand at 312.434 kb on + strand at 312.435 kb on - strand at 312.468 kb on - strand at 312.484 kb on + strand at 312.484 kb on + strand at 312.490 kb on + strand at 312.490 kb on + strand at 312.490 kb on + strand at 312.490 kb on + strand at 312.491 kb on - strand at 312.491 kb on - strand at 312.491 kb on - strand at 312.536 kb on + strand at 312.851 kb on + strand, within ECD_00280 at 312.852 kb on - strand, within ECD_00280 at 312.852 kb on - strand, within ECD_00280 at 312.853 kb on + strand, within ECD_00280 at 312.883 kb on + strand, within ECD_00280 at 313.241 kb on - strand, within ECD_00280 at 313.245 kb on + strand, within ECD_00280 at 313.258 kb on + strand, within ECD_00280 at 313.273 kb on + strand, within ECD_00280 at 313.388 kb on - strand, within ECD_00280 at 313.484 kb on - strand at 313.493 kb on + strand at 314.096 kb on + strand, within ECD_00281 at 314.177 kb on + strand, within ECD_00281 at 314.348 kb on - strand, within ECD_00281 at 314.383 kb on + strand, within ECD_00281 at 314.513 kb on + strand, within ECD_00281
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 311,617 + ECD_00279 0.62 -0.8 311,617 + ECD_00279 0.62 -1.4 311,618 - ECD_00279 0.63 +0.4 311,618 - ECD_00279 0.63 +1.3 311,618 - ECD_00279 0.63 +2.6 311,618 - ECD_00279 0.63 +0.8 311,618 - ECD_00279 0.63 +0.1 311,711 + ECD_00279 0.69 +0.7 311,751 + ECD_00279 0.72 +0.4 311,751 + ECD_00279 0.72 +1.8 311,784 + ECD_00279 0.75 +1.9 311,863 + ECD_00279 0.80 +2.5 311,864 - ECD_00279 0.80 +3.2 311,899 + ECD_00279 0.83 +0.1 311,911 + ECD_00279 0.84 +0.8 311,912 - ECD_00279 0.84 +1.4 311,912 - ECD_00279 0.84 +1.0 311,969 + ECD_00279 0.88 -0.3 311,970 - ECD_00279 0.88 +0.8 311,970 - ECD_00279 0.88 -2.1 312,072 + +0.7 312,073 - +0.3 312,165 + +0.1 312,165 + -0.4 312,168 + -2.6 312,168 + +0.1 312,177 + +0.8 312,177 + -0.4 312,206 - -1.5 312,233 - -0.4 312,266 + +1.9 312,274 + -2.8 312,274 + -0.3 312,321 + +1.9 312,334 + +1.5 312,343 + -0.7 312,423 + -2.3 312,427 + +0.7 312,434 + +0.7 312,434 + -0.7 312,434 + +0.7 312,435 - +0.9 312,468 - +0.1 312,484 + -1.5 312,484 + -1.4 312,490 + -1.8 312,490 + -0.1 312,490 + +1.4 312,490 + -0.3 312,491 - +1.1 312,491 - +0.9 312,491 - -2.3 312,536 + -1.2 312,851 + ECD_00280 0.32 -2.1 312,852 - ECD_00280 0.32 -2.9 312,852 - ECD_00280 0.32 +3.0 312,853 + ECD_00280 0.32 +1.1 312,883 + ECD_00280 0.35 +1.6 313,241 - ECD_00280 0.69 -0.3 313,245 + ECD_00280 0.70 -2.1 313,258 + ECD_00280 0.71 +0.4 313,273 + ECD_00280 0.72 -0.5 313,388 - ECD_00280 0.83 -1.8 313,484 - +1.1 313,493 + +0.0 314,096 + ECD_00281 0.36 -2.4 314,177 + ECD_00281 0.46 +0.3 314,348 - ECD_00281 0.67 +1.3 314,383 + ECD_00281 0.71 -2.6 314,513 + ECD_00281 0.87 -0.2
Or see this region's nucleotide sequence