Experiment: lambda1857_phage_12.5_MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00035 and ECD_00036 are separated by 455 nucleotides ECD_00036 and ECD_00037 are separated by 17 nucleotides
ECD_00035: ECD_00035 - dihydrodipicolinate reductase, at 32,446 to 33,267
_00035
ECD_00036: ECD_00036 - carbamoyl phosphate synthetase small subunit, glutamine amidotransferase, at 33,723 to 34,871
_00036
ECD_00037: ECD_00037 - carbamoyl-phosphate synthase large subunit, at 34,889 to 38,110
_00037
Position (kb) 33
34
35 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 33.864 kb on + strand, within ECD_00036 at 33.864 kb on + strand, within ECD_00036 at 33.881 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.888 kb on - strand, within ECD_00036 at 33.888 kb on - strand, within ECD_00036 at 33.891 kb on + strand, within ECD_00036 at 33.891 kb on + strand, within ECD_00036 at 33.892 kb on - strand, within ECD_00036 at 33.946 kb on + strand, within ECD_00036 at 34.004 kb on + strand, within ECD_00036 at 34.038 kb on - strand, within ECD_00036 at 34.224 kb on + strand, within ECD_00036 at 34.226 kb on + strand, within ECD_00036 at 34.685 kb on - strand, within ECD_00036 at 34.710 kb on - strand, within ECD_00036 at 34.710 kb on - strand, within ECD_00036 at 34.857 kb on - strand at 34.869 kb on + strand at 34.879 kb on + strand at 34.900 kb on + strand at 34.901 kb on - strand at 34.906 kb on + strand at 34.909 kb on - strand at 34.915 kb on + strand at 34.970 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.991 kb on - strand at 35.081 kb on + strand at 35.082 kb on - strand at 35.082 kb on - strand at 35.106 kb on + strand at 35.107 kb on - strand at 35.230 kb on + strand, within ECD_00037 at 35.404 kb on + strand, within ECD_00037 at 35.436 kb on - strand, within ECD_00037 at 35.669 kb on + strand, within ECD_00037
Per-strain Table
Position Strand Gene LocusTag Fraction lambda1857_phage_12.5_MOI remove 33,864 + ECD_00036 0.12 -0.6 33,864 + ECD_00036 0.12 -2.1 33,881 + ECD_00036 0.14 -2.5 33,887 + ECD_00036 0.14 -1.9 33,887 + ECD_00036 0.14 -1.1 33,887 + ECD_00036 0.14 +0.3 33,887 + ECD_00036 0.14 -0.3 33,888 - ECD_00036 0.14 -3.1 33,888 - ECD_00036 0.14 -1.8 33,891 + ECD_00036 0.15 -1.3 33,891 + ECD_00036 0.15 -2.0 33,892 - ECD_00036 0.15 +1.2 33,946 + ECD_00036 0.19 -1.9 34,004 + ECD_00036 0.24 -1.6 34,038 - ECD_00036 0.27 -0.5 34,224 + ECD_00036 0.44 -4.2 34,226 + ECD_00036 0.44 -3.3 34,685 - ECD_00036 0.84 -2.0 34,710 - ECD_00036 0.86 -1.3 34,710 - ECD_00036 0.86 -3.3 34,857 - +0.7 34,869 + +0.9 34,879 + -1.2 34,900 + -1.5 34,901 - -1.3 34,906 + +0.2 34,909 - -0.7 34,915 + -0.0 34,970 + -2.1 34,990 + -1.3 34,990 + -2.1 34,990 + -2.9 34,990 + +0.4 34,990 + -1.8 34,991 - -0.2 35,081 + -0.9 35,082 - -0.9 35,082 - -1.9 35,106 + +0.0 35,107 - +1.1 35,230 + ECD_00037 0.11 -1.4 35,404 + ECD_00037 0.16 -0.5 35,436 - ECD_00037 0.17 +0.7 35,669 + ECD_00037 0.24 -0.6
Or see this region's nucleotide sequence