Experiment: Cellotetraose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0721 and Atu0722 are separated by 336 nucleotides Atu0722 and Atu0723 are separated by 11 nucleotides Atu0723 and Atu0724 are separated by 50 nucleotides
Atu0721: Atu0721 - hypothetical protein, at 720,729 to 721,838
Atu0721
Atu0722: Atu0722 - hypothetical protein, at 722,175 to 722,693
Atu0722
Atu0723: Atu0723 - FAD dependent oxidoreductase, at 722,705 to 724,141
Atu0723
Atu0724: Atu0724 - hypothetical protein, at 724,192 to 725,169
Atu0724
Position (kb) 722
723
724
725 Strain fitness (log2 ratio) -2
-1
0
1 at 721.733 kb on - strand at 721.842 kb on - strand at 721.855 kb on - strand at 721.855 kb on - strand at 721.855 kb on - strand at 721.939 kb on - strand at 722.107 kb on + strand at 722.124 kb on - strand at 722.173 kb on - strand at 722.253 kb on + strand, within Atu0722 at 722.396 kb on - strand, within Atu0722 at 722.424 kb on + strand, within Atu0722 at 722.539 kb on - strand, within Atu0722 at 722.616 kb on - strand, within Atu0722 at 722.616 kb on - strand, within Atu0722 at 722.666 kb on + strand at 722.666 kb on + strand at 722.667 kb on + strand at 722.674 kb on - strand at 722.674 kb on - strand at 723.084 kb on - strand, within Atu0723 at 723.122 kb on - strand, within Atu0723 at 723.369 kb on - strand, within Atu0723 at 723.412 kb on + strand, within Atu0723 at 723.527 kb on + strand, within Atu0723 at 723.734 kb on + strand, within Atu0723
Per-strain Table
Position Strand Gene LocusTag Fraction Cellotetraose (C) remove 721,733 - -0.2 721,842 - +0.0 721,855 - +0.3 721,855 - -0.5 721,855 - -0.2 721,939 - +0.8 722,107 + +0.1 722,124 - -0.3 722,173 - -0.2 722,253 + Atu0722 0.15 -0.4 722,396 - Atu0722 0.43 -0.2 722,424 + Atu0722 0.48 -0.5 722,539 - Atu0722 0.70 -0.4 722,616 - Atu0722 0.85 +0.6 722,616 - Atu0722 0.85 +0.5 722,666 + +0.6 722,666 + -0.0 722,667 + -0.0 722,674 - +0.8 722,674 - -0.4 723,084 - Atu0723 0.26 -2.6 723,122 - Atu0723 0.29 -0.7 723,369 - Atu0723 0.46 -0.7 723,412 + Atu0723 0.49 +0.0 723,527 + Atu0723 0.57 +0.6 723,734 + Atu0723 0.72 -0.1
Or see this region's nucleotide sequence