Strain Fitness in Escherichia coli BW25113 around b1297

Experiment: Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycjJ and b1297 are separated by 302 nucleotidesb1297 and ycjL are separated by 211 nucleotides b1296: ycjJ - putative amino acid/amine transport protein (VIMSS), at 1,355,826 to 1,357,211 ycjJ b1297: b1297 - putative glutamine synthetase (EC 6.3.1.2) (VIMSS), at 1,357,514 to 1,358,932 b1297 b1298: ycjL - probable amidotransferase subunit (VIMSS), at 1,359,144 to 1,359,908 ycjL Position (kb) 1357 1358 1359Strain fitness (log2 ratio) -1 0 1 2at 1356.736 kb on - strand, within ycjJat 1356.934 kb on - strand, within ycjJat 1356.934 kb on - strand, within ycjJat 1356.948 kb on + strand, within ycjJat 1356.948 kb on + strand, within ycjJat 1356.949 kb on + strand, within ycjJat 1356.949 kb on + strand, within ycjJat 1357.116 kb on - strandat 1357.116 kb on - strandat 1357.150 kb on + strandat 1357.189 kb on - strandat 1357.489 kb on - strandat 1357.696 kb on - strand, within b1297at 1357.696 kb on - strand, within b1297at 1357.820 kb on + strand, within b1297at 1357.845 kb on - strand, within b1297at 1357.845 kb on - strand, within b1297at 1357.898 kb on - strand, within b1297at 1358.414 kb on + strand, within b1297at 1358.462 kb on + strand, within b1297at 1358.477 kb on - strand, within b1297at 1358.559 kb on + strand, within b1297at 1358.640 kb on - strand, within b1297at 1358.640 kb on - strand, within b1297at 1358.860 kb on + strandat 1358.868 kb on - strandat 1359.236 kb on + strand, within ycjLat 1359.236 kb on + strand, within ycjLat 1359.453 kb on + strand, within ycjLat 1359.594 kb on + strand, within ycjLat 1359.759 kb on - strand, within ycjL

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 10 vol%
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1,356,736 - ycjJ b1296 0.66 +0.4
1,356,934 - ycjJ b1296 0.80 +0.0
1,356,934 - ycjJ b1296 0.80 +0.6
1,356,948 + ycjJ b1296 0.81 +2.2
1,356,948 + ycjJ b1296 0.81 -0.1
1,356,949 + ycjJ b1296 0.81 -1.5
1,356,949 + ycjJ b1296 0.81 -0.4
1,357,116 - -0.2
1,357,116 - +0.6
1,357,150 + +0.1
1,357,189 - +0.8
1,357,489 - -0.9
1,357,696 - b1297 b1297 0.13 -0.9
1,357,696 - b1297 b1297 0.13 -0.4
1,357,820 + b1297 b1297 0.22 +0.0
1,357,845 - b1297 b1297 0.23 +1.2
1,357,845 - b1297 b1297 0.23 +0.6
1,357,898 - b1297 b1297 0.27 -0.5
1,358,414 + b1297 b1297 0.63 -0.7
1,358,462 + b1297 b1297 0.67 +1.2
1,358,477 - b1297 b1297 0.68 -0.1
1,358,559 + b1297 b1297 0.74 -0.4
1,358,640 - b1297 b1297 0.79 -0.3
1,358,640 - b1297 b1297 0.79 +0.2
1,358,860 + -0.2
1,358,868 - +0.3
1,359,236 + ycjL b1298 0.12 +0.2
1,359,236 + ycjL b1298 0.12 +0.3
1,359,453 + ycjL b1298 0.40 +0.9
1,359,594 + ycjL b1298 0.59 -0.2
1,359,759 - ycjL b1298 0.80 +1.3

Or see this region's nucleotide sequence