Experiment: Dimethyl Sulfoxide 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaiV and ampH are separated by 0 nucleotides
b0375: yaiV - predicted DNA-binding transcriptional regulator (RefSeq), at 393,730 to 394,353
yaiV
b0376: ampH - beta-lactamase/D-alanine carboxypeptidase (NCBI), at 394,354 to 395,511
ampH
Position (kb) 393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 392.747 kb on + strand at 392.829 kb on - strand at 392.831 kb on + strand at 393.017 kb on - strand at 393.175 kb on - strand at 393.175 kb on - strand at 393.200 kb on - strand at 393.285 kb on + strand at 393.432 kb on + strand at 393.432 kb on + strand at 393.439 kb on + strand at 393.447 kb on - strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.494 kb on + strand at 393.504 kb on + strand at 393.504 kb on - strand at 393.511 kb on + strand at 393.511 kb on + strand at 393.523 kb on - strand at 393.523 kb on - strand at 393.523 kb on - strand at 393.557 kb on + strand at 393.560 kb on + strand at 393.560 kb on + strand at 393.564 kb on + strand at 393.564 kb on + strand at 393.569 kb on + strand at 393.569 kb on + strand at 393.576 kb on + strand at 393.578 kb on + strand at 393.587 kb on + strand at 393.587 kb on + strand at 393.587 kb on + strand at 393.588 kb on + strand at 393.588 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.598 kb on + strand at 393.603 kb on + strand at 393.608 kb on + strand at 393.611 kb on + strand at 393.611 kb on + strand at 393.618 kb on + strand at 393.618 kb on + strand at 393.622 kb on + strand at 393.642 kb on + strand at 393.646 kb on + strand at 393.680 kb on + strand at 393.699 kb on + strand at 393.710 kb on + strand at 393.710 kb on + strand at 393.713 kb on + strand at 393.713 kb on - strand at 393.718 kb on - strand at 393.718 kb on - strand at 393.724 kb on + strand at 393.739 kb on + strand at 393.739 kb on - strand at 393.741 kb on + strand at 393.749 kb on - strand at 393.749 kb on - strand at 393.769 kb on + strand at 393.786 kb on + strand at 393.788 kb on + strand at 393.789 kb on + strand at 393.792 kb on + strand at 393.793 kb on + strand, within yaiV at 393.868 kb on - strand, within yaiV at 393.887 kb on - strand, within yaiV at 393.901 kb on - strand, within yaiV at 393.901 kb on - strand, within yaiV at 393.910 kb on - strand, within yaiV at 393.912 kb on + strand, within yaiV at 393.912 kb on + strand, within yaiV at 394.044 kb on - strand, within yaiV at 394.083 kb on - strand, within yaiV at 394.128 kb on + strand, within yaiV at 394.170 kb on - strand, within yaiV at 394.203 kb on + strand, within yaiV at 394.205 kb on + strand, within yaiV at 394.205 kb on + strand, within yaiV at 394.209 kb on - strand, within yaiV at 394.209 kb on - strand, within yaiV at 394.212 kb on - strand, within yaiV at 394.241 kb on - strand, within yaiV at 394.244 kb on - strand, within yaiV at 394.244 kb on - strand, within yaiV at 394.248 kb on - strand, within yaiV at 394.256 kb on - strand, within yaiV at 394.256 kb on - strand, within yaiV at 394.256 kb on - strand, within yaiV at 394.262 kb on + strand, within yaiV at 394.264 kb on + strand, within yaiV at 394.264 kb on + strand, within yaiV at 394.271 kb on + strand, within yaiV at 394.279 kb on - strand, within yaiV at 394.281 kb on + strand, within yaiV at 394.281 kb on + strand, within yaiV at 394.313 kb on - strand at 394.313 kb on - strand at 394.325 kb on + strand at 394.334 kb on - strand at 394.335 kb on + strand at 394.355 kb on - strand at 394.355 kb on - strand at 394.355 kb on - strand at 394.355 kb on - strand at 394.355 kb on - strand at 394.357 kb on - strand at 394.378 kb on - strand at 394.378 kb on - strand at 394.381 kb on + strand at 394.389 kb on - strand at 394.389 kb on - strand at 394.394 kb on - strand at 394.394 kb on - strand at 394.394 kb on - strand at 394.402 kb on - strand at 394.408 kb on + strand at 394.408 kb on + strand at 394.413 kb on - strand at 394.413 kb on - strand at 394.416 kb on - strand at 394.416 kb on - strand at 394.416 kb on - strand at 394.421 kb on - strand at 394.421 kb on - strand at 394.446 kb on - strand at 394.446 kb on - strand at 394.454 kb on - strand at 394.454 kb on - strand at 394.461 kb on - strand at 394.467 kb on - strand at 394.469 kb on - strand at 394.469 kb on - strand at 394.475 kb on + strand, within ampH at 394.475 kb on + strand, within ampH at 394.497 kb on + strand, within ampH at 394.502 kb on - strand, within ampH at 394.504 kb on + strand, within ampH at 394.505 kb on - strand, within ampH at 394.505 kb on - strand, within ampH at 394.542 kb on + strand, within ampH at 394.560 kb on - strand, within ampH at 394.565 kb on + strand, within ampH at 394.576 kb on - strand, within ampH at 394.576 kb on - strand, within ampH at 394.576 kb on - strand, within ampH at 394.582 kb on - strand, within ampH at 394.616 kb on - strand, within ampH at 394.619 kb on - strand, within ampH at 394.620 kb on - strand, within ampH at 394.628 kb on + strand, within ampH at 394.665 kb on + strand, within ampH at 394.665 kb on + strand, within ampH at 394.719 kb on - strand, within ampH at 394.850 kb on - strand, within ampH at 394.850 kb on - strand, within ampH at 394.853 kb on + strand, within ampH at 394.909 kb on - strand, within ampH at 394.942 kb on - strand, within ampH at 394.942 kb on - strand, within ampH at 394.942 kb on - strand, within ampH at 394.955 kb on + strand, within ampH at 394.956 kb on + strand, within ampH at 394.964 kb on - strand, within ampH at 394.964 kb on - strand, within ampH at 395.074 kb on - strand, within ampH at 395.200 kb on + strand, within ampH at 395.200 kb on + strand, within ampH at 395.208 kb on - strand, within ampH at 395.208 kb on - strand, within ampH at 395.223 kb on + strand, within ampH at 395.227 kb on + strand, within ampH at 395.227 kb on + strand, within ampH at 395.280 kb on - strand, within ampH at 395.298 kb on - strand, within ampH at 395.350 kb on + strand, within ampH
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 10 vol% remove 392,747 + +2.0 392,829 - +0.3 392,831 + +0.8 393,017 - +0.2 393,175 - -0.0 393,175 - -0.2 393,200 - -0.6 393,285 + -0.2 393,432 + +1.0 393,432 + -0.8 393,439 + -0.5 393,447 - +1.0 393,492 - +0.4 393,492 - -0.8 393,494 + +0.6 393,504 + -0.7 393,504 - +0.4 393,511 + -0.5 393,511 + +0.3 393,523 - +1.0 393,523 - +0.2 393,523 - +0.2 393,557 + +0.4 393,560 + +0.6 393,560 + +1.8 393,564 + +1.3 393,564 + -2.1 393,569 + +0.3 393,569 + +0.8 393,576 + -1.3 393,578 + +0.4 393,587 + +0.3 393,587 + -0.9 393,587 + -0.3 393,588 + +1.1 393,588 + -2.5 393,598 + +0.4 393,598 + +1.0 393,598 + +0.2 393,598 + -0.7 393,598 + +1.0 393,598 + -0.1 393,598 + -1.3 393,598 + -0.9 393,598 + -0.2 393,598 + +0.1 393,598 + +0.4 393,598 + -1.5 393,598 + -0.6 393,598 + -1.0 393,598 + -1.9 393,598 + +0.2 393,598 + +0.4 393,598 + +0.2 393,598 + +0.1 393,598 + +0.4 393,598 + +0.1 393,598 + -1.2 393,598 + -0.6 393,598 + -0.0 393,598 + +1.2 393,598 + +0.1 393,603 + +0.5 393,608 + -0.2 393,611 + -0.8 393,611 + -0.8 393,618 + +0.4 393,618 + -0.5 393,622 + +1.8 393,642 + +0.3 393,646 + -0.6 393,680 + +1.1 393,699 + +0.2 393,710 + -0.2 393,710 + -0.4 393,713 + -0.2 393,713 - -1.8 393,718 - -0.2 393,718 - -0.6 393,724 + -0.3 393,739 + +0.2 393,739 - -0.4 393,741 + +0.0 393,749 - -0.8 393,749 - +1.8 393,769 + +1.4 393,786 + -2.1 393,788 + +0.1 393,789 + +0.3 393,792 + -0.5 393,793 + yaiV b0375 0.10 -0.4 393,868 - yaiV b0375 0.22 -1.2 393,887 - yaiV b0375 0.25 -0.4 393,901 - yaiV b0375 0.27 -0.5 393,901 - yaiV b0375 0.27 +0.6 393,910 - yaiV b0375 0.29 +0.6 393,912 + yaiV b0375 0.29 -1.5 393,912 + yaiV b0375 0.29 -3.6 394,044 - yaiV b0375 0.50 -0.6 394,083 - yaiV b0375 0.57 -0.9 394,128 + yaiV b0375 0.64 -0.2 394,170 - yaiV b0375 0.71 -1.1 394,203 + yaiV b0375 0.76 -0.6 394,205 + yaiV b0375 0.76 +0.8 394,205 + yaiV b0375 0.76 +0.0 394,209 - yaiV b0375 0.77 +0.2 394,209 - yaiV b0375 0.77 +0.5 394,212 - yaiV b0375 0.77 +1.2 394,241 - yaiV b0375 0.82 +1.2 394,244 - yaiV b0375 0.82 -0.2 394,244 - yaiV b0375 0.82 -0.5 394,248 - yaiV b0375 0.83 +0.6 394,256 - yaiV b0375 0.84 +1.2 394,256 - yaiV b0375 0.84 +0.0 394,256 - yaiV b0375 0.84 +0.2 394,262 + yaiV b0375 0.85 +0.2 394,264 + yaiV b0375 0.86 -0.2 394,264 + yaiV b0375 0.86 -0.6 394,271 + yaiV b0375 0.87 -0.2 394,279 - yaiV b0375 0.88 -0.2 394,281 + yaiV b0375 0.88 -2.0 394,281 + yaiV b0375 0.88 +0.2 394,313 - -0.5 394,313 - +1.4 394,325 + -1.1 394,334 - +1.1 394,335 + -0.1 394,355 - +0.1 394,355 - -2.0 394,355 - +1.0 394,355 - +1.2 394,355 - +0.1 394,357 - -0.8 394,378 - +0.2 394,378 - -0.4 394,381 + -0.4 394,389 - +0.5 394,389 - +0.4 394,394 - +0.4 394,394 - +0.4 394,394 - -0.7 394,402 - +0.1 394,408 + +0.0 394,408 + +0.2 394,413 - -0.1 394,413 - -0.0 394,416 - +0.8 394,416 - +1.8 394,416 - +0.4 394,421 - +1.4 394,421 - -0.4 394,446 - +0.8 394,446 - -0.9 394,454 - -0.1 394,454 - +0.2 394,461 - +0.3 394,467 - +0.3 394,469 - +0.2 394,469 - +2.4 394,475 + ampH b0376 0.10 -1.1 394,475 + ampH b0376 0.10 -0.2 394,497 + ampH b0376 0.12 +0.4 394,502 - ampH b0376 0.13 +0.8 394,504 + ampH b0376 0.13 -0.4 394,505 - ampH b0376 0.13 +1.8 394,505 - ampH b0376 0.13 -0.2 394,542 + ampH b0376 0.16 -0.4 394,560 - ampH b0376 0.18 -0.7 394,565 + ampH b0376 0.18 +0.5 394,576 - ampH b0376 0.19 +0.4 394,576 - ampH b0376 0.19 +0.2 394,576 - ampH b0376 0.19 +0.0 394,582 - ampH b0376 0.20 -0.6 394,616 - ampH b0376 0.23 -0.7 394,619 - ampH b0376 0.23 +0.0 394,620 - ampH b0376 0.23 +0.6 394,628 + ampH b0376 0.24 -0.9 394,665 + ampH b0376 0.27 -0.9 394,665 + ampH b0376 0.27 +0.7 394,719 - ampH b0376 0.32 +1.0 394,850 - ampH b0376 0.43 -0.2 394,850 - ampH b0376 0.43 +1.4 394,853 + ampH b0376 0.43 +1.1 394,909 - ampH b0376 0.48 +0.3 394,942 - ampH b0376 0.51 -0.2 394,942 - ampH b0376 0.51 -0.2 394,942 - ampH b0376 0.51 +2.4 394,955 + ampH b0376 0.52 -0.1 394,956 + ampH b0376 0.52 +0.8 394,964 - ampH b0376 0.53 +1.8 394,964 - ampH b0376 0.53 +0.8 395,074 - ampH b0376 0.62 +0.3 395,200 + ampH b0376 0.73 -0.9 395,200 + ampH b0376 0.73 +0.3 395,208 - ampH b0376 0.74 -0.6 395,208 - ampH b0376 0.74 +0.3 395,223 + ampH b0376 0.75 +0.4 395,227 + ampH b0376 0.75 -0.2 395,227 + ampH b0376 0.75 +1.2 395,280 - ampH b0376 0.80 -0.2 395,298 - ampH b0376 0.82 -0.2 395,350 + ampH b0376 0.86 -0.6
Or see this region's nucleotide sequence