Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_840 and PfGW456L13_841 are separated by 186 nucleotides PfGW456L13_841 and PfGW456L13_842 overlap by 4 nucleotides PfGW456L13_842 and PfGW456L13_843 are separated by 2 nucleotides PfGW456L13_843 and PfGW456L13_844 are separated by 13 nucleotides
PfGW456L13_840 - FIG00953808: hypothetical protein, at 948,570 to 948,893
_840
PfGW456L13_841 - Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase, at 949,080 to 949,787
_841
PfGW456L13_842 - Tyrosine recombinase XerC, at 949,784 to 950,683
_842
PfGW456L13_843 - Protein of unknown function DUF484, at 950,686 to 951,411
_843
PfGW456L13_844 - Diaminopimelate epimerase (EC 5.1.1.7), at 951,425 to 952,255
_844
Position (kb)
949
950
951 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 948.873 kb on + strand at 948.873 kb on + strand at 948.874 kb on - strand at 948.888 kb on - strand at 948.908 kb on + strand at 949.026 kb on + strand at 949.026 kb on + strand at 949.026 kb on + strand at 949.026 kb on + strand at 949.027 kb on - strand at 949.039 kb on - strand at 949.039 kb on - strand at 949.363 kb on + strand, within PfGW456L13_841 at 949.364 kb on - strand, within PfGW456L13_841 at 949.364 kb on - strand, within PfGW456L13_841 at 949.497 kb on + strand, within PfGW456L13_841 at 949.498 kb on - strand, within PfGW456L13_841 at 949.498 kb on - strand, within PfGW456L13_841 at 949.781 kb on + strand at 949.781 kb on + strand at 949.782 kb on - strand at 949.833 kb on + strand at 949.834 kb on - strand at 949.869 kb on + strand at 949.869 kb on + strand at 949.869 kb on + strand at 949.870 kb on - strand at 949.870 kb on - strand at 949.870 kb on - strand at 950.147 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.436 kb on + strand, within PfGW456L13_842 at 950.442 kb on + strand, within PfGW456L13_842 at 950.442 kb on + strand, within PfGW456L13_842 at 950.443 kb on - strand, within PfGW456L13_842 at 950.443 kb on - strand, within PfGW456L13_842 at 950.465 kb on + strand, within PfGW456L13_842 at 950.661 kb on + strand at 950.662 kb on - strand at 950.692 kb on + strand at 950.750 kb on + strand at 950.750 kb on + strand at 950.750 kb on + strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.784 kb on - strand, within PfGW456L13_843 at 950.784 kb on - strand, within PfGW456L13_843 at 951.270 kb on + strand, within PfGW456L13_843 at 951.338 kb on - strand, within PfGW456L13_843 at 951.338 kb on - strand, within PfGW456L13_843 at 951.447 kb on + strand at 951.447 kb on + strand at 951.447 kb on + strand at 951.447 kb on + strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.449 kb on + strand at 951.449 kb on + strand at 951.449 kb on + strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.537 kb on - strand, within PfGW456L13_844
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 948,873 + +0.4 948,873 + -0.7 948,874 - +0.4 948,888 - -0.7 948,908 + +0.7 949,026 + +0.0 949,026 + -1.9 949,026 + +0.2 949,026 + +0.1 949,027 - +0.4 949,039 - +0.9 949,039 - +0.7 949,363 + PfGW456L13_841 0.40 +0.3 949,364 - PfGW456L13_841 0.40 +0.0 949,364 - PfGW456L13_841 0.40 +0.7 949,497 + PfGW456L13_841 0.59 +0.3 949,498 - PfGW456L13_841 0.59 +0.7 949,498 - PfGW456L13_841 0.59 -0.8 949,781 + +0.6 949,781 + +1.4 949,782 - -0.6 949,833 + -1.7 949,834 - -0.8 949,869 + -1.5 949,869 + -1.2 949,869 + -3.3 949,870 - -0.3 949,870 - -0.7 949,870 - -0.7 950,147 + PfGW456L13_842 0.40 -0.7 950,262 + PfGW456L13_842 0.53 -0.5 950,262 + PfGW456L13_842 0.53 -0.1 950,262 + PfGW456L13_842 0.53 +1.6 950,262 + PfGW456L13_842 0.53 -0.2 950,262 + PfGW456L13_842 0.53 -1.7 950,263 - PfGW456L13_842 0.53 -0.6 950,263 - PfGW456L13_842 0.53 -0.4 950,263 - PfGW456L13_842 0.53 +0.4 950,263 - PfGW456L13_842 0.53 -1.0 950,263 - PfGW456L13_842 0.53 -1.3 950,436 + PfGW456L13_842 0.72 +0.6 950,442 + PfGW456L13_842 0.73 -1.2 950,442 + PfGW456L13_842 0.73 -1.8 950,443 - PfGW456L13_842 0.73 -2.0 950,443 - PfGW456L13_842 0.73 -0.4 950,465 + PfGW456L13_842 0.76 +0.0 950,661 + -1.4 950,662 - +0.8 950,692 + +0.6 950,750 + -0.2 950,750 + -0.7 950,750 + -1.5 950,751 - +0.3 950,751 - +0.6 950,751 - -1.0 950,751 - -0.6 950,751 - +0.7 950,751 - -0.4 950,751 - -1.3 950,751 - +0.1 950,784 - PfGW456L13_843 0.13 +0.3 950,784 - PfGW456L13_843 0.13 -1.9 951,270 + PfGW456L13_843 0.80 -0.7 951,338 - PfGW456L13_843 0.90 -0.3 951,338 - PfGW456L13_843 0.90 -1.3 951,447 + +0.6 951,447 + +0.0 951,447 + +0.4 951,447 + -0.9 951,448 - +0.3 951,448 - -0.4 951,448 - +0.4 951,448 - +0.0 951,449 + -0.1 951,449 + -0.1 951,449 + -1.2 951,450 - -0.2 951,450 - -0.4 951,450 - +0.7 951,450 - -1.4 951,450 - +1.2 951,450 - +0.7 951,450 - +0.8 951,450 - -0.1 951,450 - -0.7 951,450 - +0.6 951,450 - +1.4 951,450 - -0.2 951,450 - -0.2 951,450 - +0.1 951,450 - +0.7 951,450 - -0.5 951,537 - PfGW456L13_844 0.13 -0.2
Or see this region's nucleotide sequence