Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_842

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_840 and PfGW456L13_841 are separated by 186 nucleotidesPfGW456L13_841 and PfGW456L13_842 overlap by 4 nucleotidesPfGW456L13_842 and PfGW456L13_843 are separated by 2 nucleotidesPfGW456L13_843 and PfGW456L13_844 are separated by 13 nucleotides PfGW456L13_840 - FIG00953808: hypothetical protein, at 948,570 to 948,893 _840 PfGW456L13_841 - Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase, at 949,080 to 949,787 _841 PfGW456L13_842 - Tyrosine recombinase XerC, at 949,784 to 950,683 _842 PfGW456L13_843 - Protein of unknown function DUF484, at 950,686 to 951,411 _843 PfGW456L13_844 - Diaminopimelate epimerase (EC 5.1.1.7), at 951,425 to 952,255 _844 Position (kb) 949 950 951Strain fitness (log2 ratio) -3 -2 -1 0 1at 948.873 kb on + strandat 948.873 kb on + strandat 948.874 kb on - strandat 948.888 kb on - strandat 948.908 kb on + strandat 949.026 kb on + strandat 949.026 kb on + strandat 949.026 kb on + strandat 949.026 kb on + strandat 949.027 kb on - strandat 949.039 kb on - strandat 949.039 kb on - strandat 949.363 kb on + strand, within PfGW456L13_841at 949.364 kb on - strand, within PfGW456L13_841at 949.364 kb on - strand, within PfGW456L13_841at 949.497 kb on + strand, within PfGW456L13_841at 949.498 kb on - strand, within PfGW456L13_841at 949.498 kb on - strand, within PfGW456L13_841at 949.781 kb on + strandat 949.781 kb on + strandat 949.782 kb on - strandat 949.833 kb on + strandat 949.834 kb on - strandat 949.869 kb on + strandat 949.869 kb on + strandat 949.869 kb on + strandat 949.870 kb on - strandat 949.870 kb on - strandat 949.870 kb on - strandat 950.147 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.436 kb on + strand, within PfGW456L13_842at 950.442 kb on + strand, within PfGW456L13_842at 950.442 kb on + strand, within PfGW456L13_842at 950.443 kb on - strand, within PfGW456L13_842at 950.443 kb on - strand, within PfGW456L13_842at 950.465 kb on + strand, within PfGW456L13_842at 950.661 kb on + strandat 950.662 kb on - strandat 950.692 kb on + strandat 950.750 kb on + strandat 950.750 kb on + strandat 950.750 kb on + strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.784 kb on - strand, within PfGW456L13_843at 950.784 kb on - strand, within PfGW456L13_843at 951.270 kb on + strand, within PfGW456L13_843at 951.338 kb on - strand, within PfGW456L13_843at 951.338 kb on - strand, within PfGW456L13_843at 951.447 kb on + strandat 951.447 kb on + strandat 951.447 kb on + strandat 951.447 kb on + strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.449 kb on + strandat 951.449 kb on + strandat 951.449 kb on + strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.537 kb on - strand, within PfGW456L13_844

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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948,873 + +0.4
948,873 + -0.7
948,874 - +0.4
948,888 - -0.7
948,908 + +0.7
949,026 + +0.0
949,026 + -1.9
949,026 + +0.2
949,026 + +0.1
949,027 - +0.4
949,039 - +0.9
949,039 - +0.7
949,363 + PfGW456L13_841 0.40 +0.3
949,364 - PfGW456L13_841 0.40 +0.0
949,364 - PfGW456L13_841 0.40 +0.7
949,497 + PfGW456L13_841 0.59 +0.3
949,498 - PfGW456L13_841 0.59 +0.7
949,498 - PfGW456L13_841 0.59 -0.8
949,781 + +0.6
949,781 + +1.4
949,782 - -0.6
949,833 + -1.7
949,834 - -0.8
949,869 + -1.5
949,869 + -1.2
949,869 + -3.3
949,870 - -0.3
949,870 - -0.7
949,870 - -0.7
950,147 + PfGW456L13_842 0.40 -0.7
950,262 + PfGW456L13_842 0.53 -0.5
950,262 + PfGW456L13_842 0.53 -0.1
950,262 + PfGW456L13_842 0.53 +1.6
950,262 + PfGW456L13_842 0.53 -0.2
950,262 + PfGW456L13_842 0.53 -1.7
950,263 - PfGW456L13_842 0.53 -0.6
950,263 - PfGW456L13_842 0.53 -0.4
950,263 - PfGW456L13_842 0.53 +0.4
950,263 - PfGW456L13_842 0.53 -1.0
950,263 - PfGW456L13_842 0.53 -1.3
950,436 + PfGW456L13_842 0.72 +0.6
950,442 + PfGW456L13_842 0.73 -1.2
950,442 + PfGW456L13_842 0.73 -1.8
950,443 - PfGW456L13_842 0.73 -2.0
950,443 - PfGW456L13_842 0.73 -0.4
950,465 + PfGW456L13_842 0.76 +0.0
950,661 + -1.4
950,662 - +0.8
950,692 + +0.6
950,750 + -0.2
950,750 + -0.7
950,750 + -1.5
950,751 - +0.3
950,751 - +0.6
950,751 - -1.0
950,751 - -0.6
950,751 - +0.7
950,751 - -0.4
950,751 - -1.3
950,751 - +0.1
950,784 - PfGW456L13_843 0.13 +0.3
950,784 - PfGW456L13_843 0.13 -1.9
951,270 + PfGW456L13_843 0.80 -0.7
951,338 - PfGW456L13_843 0.90 -0.3
951,338 - PfGW456L13_843 0.90 -1.3
951,447 + +0.6
951,447 + +0.0
951,447 + +0.4
951,447 + -0.9
951,448 - +0.3
951,448 - -0.4
951,448 - +0.4
951,448 - +0.0
951,449 + -0.1
951,449 + -0.1
951,449 + -1.2
951,450 - -0.2
951,450 - -0.4
951,450 - +0.7
951,450 - -1.4
951,450 - +1.2
951,450 - +0.7
951,450 - +0.8
951,450 - -0.1
951,450 - -0.7
951,450 - +0.6
951,450 - +1.4
951,450 - -0.2
951,450 - -0.2
951,450 - +0.1
951,450 - +0.7
951,450 - -0.5
951,537 - PfGW456L13_844 0.13 -0.2

Or see this region's nucleotide sequence