Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_810 and PfGW456L13_811 are separated by 152 nucleotides PfGW456L13_811 and PfGW456L13_812 are separated by 151 nucleotides PfGW456L13_812 and PfGW456L13_813 overlap by 29 nucleotides PfGW456L13_813 and PfGW456L13_814 are separated by 99 nucleotides
PfGW456L13_810 - FIG00954130: hypothetical protein, at 909,302 to 909,565
_810
PfGW456L13_811 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 909,718 to 910,206
_811
PfGW456L13_812 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 910,358 to 911,668
_812
PfGW456L13_813 - Translation initiation inhibitor, at 911,640 to 911,993
_813
PfGW456L13_814 - Alanine racemase (EC 5.1.1.1), at 912,093 to 913,166
_814
Position (kb) 910
911
912 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 909.416 kb on + strand, within PfGW456L13_810 at 909.417 kb on - strand, within PfGW456L13_810 at 909.417 kb on - strand, within PfGW456L13_810 at 909.417 kb on - strand, within PfGW456L13_810 at 909.417 kb on - strand, within PfGW456L13_810 at 909.417 kb on - strand, within PfGW456L13_810 at 909.533 kb on + strand, within PfGW456L13_810 at 909.533 kb on + strand, within PfGW456L13_810 at 909.533 kb on + strand, within PfGW456L13_810 at 909.533 kb on + strand, within PfGW456L13_810 at 909.533 kb on + strand, within PfGW456L13_810 at 909.534 kb on - strand, within PfGW456L13_810 at 909.534 kb on - strand, within PfGW456L13_810 at 909.563 kb on + strand at 909.563 kb on + strand at 909.563 kb on + strand at 909.564 kb on - strand at 909.626 kb on + strand at 909.626 kb on + strand at 909.627 kb on - strand at 909.770 kb on + strand, within PfGW456L13_811 at 909.770 kb on + strand, within PfGW456L13_811 at 909.866 kb on + strand, within PfGW456L13_811 at 909.945 kb on + strand, within PfGW456L13_811 at 909.946 kb on - strand, within PfGW456L13_811 at 909.959 kb on + strand, within PfGW456L13_811 at 909.993 kb on + strand, within PfGW456L13_811 at 910.256 kb on + strand at 910.266 kb on + strand at 910.266 kb on + strand at 910.325 kb on - strand at 910.357 kb on + strand at 910.412 kb on + strand at 910.412 kb on + strand at 910.413 kb on - strand at 910.416 kb on - strand at 910.514 kb on + strand, within PfGW456L13_812 at 910.619 kb on + strand, within PfGW456L13_812 at 910.619 kb on + strand, within PfGW456L13_812 at 910.771 kb on + strand, within PfGW456L13_812 at 910.876 kb on + strand, within PfGW456L13_812 at 911.129 kb on + strand, within PfGW456L13_812 at 911.175 kb on - strand, within PfGW456L13_812 at 911.256 kb on - strand, within PfGW456L13_812 at 911.599 kb on + strand at 911.599 kb on + strand at 911.599 kb on + strand at 911.600 kb on - strand at 911.706 kb on + strand, within PfGW456L13_813 at 911.838 kb on + strand, within PfGW456L13_813 at 911.838 kb on + strand, within PfGW456L13_813 at 911.991 kb on + strand at 911.991 kb on + strand at 911.991 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 909,416 + PfGW456L13_810 0.43 +1.9 909,417 - PfGW456L13_810 0.44 +0.6 909,417 - PfGW456L13_810 0.44 -1.3 909,417 - PfGW456L13_810 0.44 -0.7 909,417 - PfGW456L13_810 0.44 -1.1 909,417 - PfGW456L13_810 0.44 -0.2 909,533 + PfGW456L13_810 0.88 +0.4 909,533 + PfGW456L13_810 0.88 +0.7 909,533 + PfGW456L13_810 0.88 +0.8 909,533 + PfGW456L13_810 0.88 +0.5 909,533 + PfGW456L13_810 0.88 +0.3 909,534 - PfGW456L13_810 0.88 -0.3 909,534 - PfGW456L13_810 0.88 +0.4 909,563 + +0.3 909,563 + +0.6 909,563 + +0.6 909,564 - +0.3 909,626 + -0.5 909,626 + +0.7 909,627 - -0.5 909,770 + PfGW456L13_811 0.11 -0.8 909,770 + PfGW456L13_811 0.11 -1.9 909,866 + PfGW456L13_811 0.30 -0.2 909,945 + PfGW456L13_811 0.46 -0.4 909,946 - PfGW456L13_811 0.47 -1.1 909,959 + PfGW456L13_811 0.49 +0.3 909,993 + PfGW456L13_811 0.56 -0.5 910,256 + -0.5 910,266 + +0.5 910,266 + +0.6 910,325 - -1.2 910,357 + -0.4 910,412 + -2.8 910,412 + -0.3 910,413 - -1.6 910,416 - -0.7 910,514 + PfGW456L13_812 0.12 -1.8 910,619 + PfGW456L13_812 0.20 -0.3 910,619 + PfGW456L13_812 0.20 -1.6 910,771 + PfGW456L13_812 0.32 -0.5 910,876 + PfGW456L13_812 0.40 -0.5 911,129 + PfGW456L13_812 0.59 -3.0 911,175 - PfGW456L13_812 0.62 +1.6 911,256 - PfGW456L13_812 0.68 +0.4 911,599 + +0.2 911,599 + +1.1 911,599 + +0.3 911,600 - -0.2 911,706 + PfGW456L13_813 0.19 -0.3 911,838 + PfGW456L13_813 0.56 +0.4 911,838 + PfGW456L13_813 0.56 +0.3 911,991 + +0.0 911,991 + +0.3 911,991 + +0.1
Or see this region's nucleotide sequence