Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_727

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_726 and PfGW456L13_727 are separated by 377 nucleotidesPfGW456L13_727 and PfGW456L13_728 are separated by 205 nucleotides PfGW456L13_726 - Phosphogluconate repressor HexR, RpiR family, at 824,700 to 825,566 _726 PfGW456L13_727 - LysR family transcriptional regulator PA5437, at 825,944 to 826,891 _727 PfGW456L13_728 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 827,097 to 828,512 _728 Position (kb) 825 826 827Strain fitness (log2 ratio) -3 -2 -1 0 1at 824.979 kb on + strand, within PfGW456L13_726at 824.979 kb on + strand, within PfGW456L13_726at 824.980 kb on - strand, within PfGW456L13_726at 825.011 kb on + strand, within PfGW456L13_726at 825.011 kb on + strand, within PfGW456L13_726at 825.011 kb on + strand, within PfGW456L13_726at 825.011 kb on + strand, within PfGW456L13_726at 825.011 kb on + strand, within PfGW456L13_726at 825.011 kb on + strand, within PfGW456L13_726at 825.012 kb on - strand, within PfGW456L13_726at 825.012 kb on - strand, within PfGW456L13_726at 825.012 kb on - strand, within PfGW456L13_726at 825.012 kb on - strand, within PfGW456L13_726at 825.099 kb on + strand, within PfGW456L13_726at 825.099 kb on + strand, within PfGW456L13_726at 825.100 kb on - strand, within PfGW456L13_726at 825.100 kb on - strand, within PfGW456L13_726at 825.100 kb on - strand, within PfGW456L13_726at 825.160 kb on + strand, within PfGW456L13_726at 825.161 kb on - strand, within PfGW456L13_726at 825.161 kb on - strand, within PfGW456L13_726at 825.178 kb on - strand, within PfGW456L13_726at 825.178 kb on - strand, within PfGW456L13_726at 825.399 kb on + strand, within PfGW456L13_726at 825.399 kb on + strand, within PfGW456L13_726at 825.399 kb on + strand, within PfGW456L13_726at 825.635 kb on + strandat 825.635 kb on + strandat 825.636 kb on - strandat 825.685 kb on + strandat 825.685 kb on + strandat 825.685 kb on + strandat 825.685 kb on + strandat 826.196 kb on + strand, within PfGW456L13_727at 826.196 kb on + strand, within PfGW456L13_727at 826.196 kb on + strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.270 kb on - strand, within PfGW456L13_727at 826.323 kb on + strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.694 kb on + strand, within PfGW456L13_727at 826.719 kb on + strand, within PfGW456L13_727at 826.720 kb on - strand, within PfGW456L13_727at 826.720 kb on - strand, within PfGW456L13_727at 826.737 kb on + strand, within PfGW456L13_727at 826.737 kb on + strand, within PfGW456L13_727at 826.738 kb on - strand, within PfGW456L13_727at 826.738 kb on - strand, within PfGW456L13_727at 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.834 kb on - strandat 826.946 kb on - strandat 827.006 kb on - strandat 827.057 kb on + strandat 827.057 kb on + strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.149 kb on + strandat 827.150 kb on - strandat 827.150 kb on - strandat 827.150 kb on - strandat 827.191 kb on - strandat 827.476 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
824,979 + PfGW456L13_726 0.32 -0.5
824,979 + PfGW456L13_726 0.32 -0.3
824,980 - PfGW456L13_726 0.32 -0.3
825,011 + PfGW456L13_726 0.36 -1.7
825,011 + PfGW456L13_726 0.36 -0.8
825,011 + PfGW456L13_726 0.36 -0.4
825,011 + PfGW456L13_726 0.36 +0.2
825,011 + PfGW456L13_726 0.36 +0.2
825,011 + PfGW456L13_726 0.36 -0.1
825,012 - PfGW456L13_726 0.36 -0.9
825,012 - PfGW456L13_726 0.36 -0.1
825,012 - PfGW456L13_726 0.36 +0.9
825,012 - PfGW456L13_726 0.36 +0.0
825,099 + PfGW456L13_726 0.46 -0.9
825,099 + PfGW456L13_726 0.46 -0.1
825,100 - PfGW456L13_726 0.46 +0.9
825,100 - PfGW456L13_726 0.46 +0.4
825,100 - PfGW456L13_726 0.46 -0.5
825,160 + PfGW456L13_726 0.53 -0.5
825,161 - PfGW456L13_726 0.53 -0.4
825,161 - PfGW456L13_726 0.53 -0.7
825,178 - PfGW456L13_726 0.55 +0.3
825,178 - PfGW456L13_726 0.55 +0.2
825,399 + PfGW456L13_726 0.81 -2.1
825,399 + PfGW456L13_726 0.81 -1.0
825,399 + PfGW456L13_726 0.81 +0.3
825,635 + +0.2
825,635 + +0.4
825,636 - -0.0
825,685 + -0.0
825,685 + +1.1
825,685 + -1.1
825,685 + -1.3
826,196 + PfGW456L13_727 0.27 -0.8
826,196 + PfGW456L13_727 0.27 -0.2
826,196 + PfGW456L13_727 0.27 -0.3
826,197 - PfGW456L13_727 0.27 -1.7
826,197 - PfGW456L13_727 0.27 -0.1
826,197 - PfGW456L13_727 0.27 +1.3
826,269 + PfGW456L13_727 0.34 -0.3
826,269 + PfGW456L13_727 0.34 -0.8
826,269 + PfGW456L13_727 0.34 -1.2
826,269 + PfGW456L13_727 0.34 -0.6
826,269 + PfGW456L13_727 0.34 -2.4
826,270 - PfGW456L13_727 0.34 -0.8
826,323 + PfGW456L13_727 0.40 -2.9
826,324 - PfGW456L13_727 0.40 -0.8
826,324 - PfGW456L13_727 0.40 -0.8
826,324 - PfGW456L13_727 0.40 -0.2
826,694 + PfGW456L13_727 0.79 -0.8
826,719 + PfGW456L13_727 0.82 -0.2
826,720 - PfGW456L13_727 0.82 -0.7
826,720 - PfGW456L13_727 0.82 -1.5
826,737 + PfGW456L13_727 0.84 -1.0
826,737 + PfGW456L13_727 0.84 -1.6
826,738 - PfGW456L13_727 0.84 -0.4
826,738 - PfGW456L13_727 0.84 +0.1
826,833 + -0.1
826,833 + +1.2
826,833 + -1.0
826,833 + -0.7
826,833 + -0.5
826,833 + -0.1
826,834 - -0.3
826,946 - -0.5
827,006 - -0.6
827,057 + -0.1
827,057 + -0.6
827,058 - -0.9
827,058 - -0.3
827,058 - -1.5
827,058 - -2.5
827,149 + -1.2
827,150 - -0.6
827,150 - -0.4
827,150 - -0.9
827,191 - +0.6
827,476 + PfGW456L13_728 0.27 +0.4
827,699 + PfGW456L13_728 0.43 -0.7
827,699 + PfGW456L13_728 0.43 -0.2
827,699 + PfGW456L13_728 0.43 -0.6
827,699 + PfGW456L13_728 0.43 -0.9
827,700 - PfGW456L13_728 0.43 -1.0
827,700 - PfGW456L13_728 0.43 -2.4
827,700 - PfGW456L13_728 0.43 -0.9
827,853 + PfGW456L13_728 0.53 -2.4
827,853 + PfGW456L13_728 0.53 -0.1
827,853 + PfGW456L13_728 0.53 +0.2
827,853 + PfGW456L13_728 0.53 -0.9
827,853 + PfGW456L13_728 0.53 -1.4
827,854 - PfGW456L13_728 0.53 -0.4
827,854 - PfGW456L13_728 0.53 -0.7
827,854 - PfGW456L13_728 0.53 -2.3
827,854 - PfGW456L13_728 0.53 -1.9
827,854 - PfGW456L13_728 0.53 -2.7
827,854 - PfGW456L13_728 0.53 -1.3
827,854 - PfGW456L13_728 0.53 -0.2

Or see this region's nucleotide sequence