Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5143 and PfGW456L13_5144 are separated by 106 nucleotides PfGW456L13_5144 and PfGW456L13_5145 are separated by 173 nucleotides PfGW456L13_5145 and PfGW456L13_5146 are separated by 10 nucleotides
PfGW456L13_5143 - transcriptional regulator, MerR family, at 5,740,273 to 5,740,644
_5143
PfGW456L13_5144 - FIG00954870: hypothetical protein, at 5,740,751 to 5,741,095
_5144
PfGW456L13_5145 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) <small>(from data)</small>, at 5,741,269 to 5,742,156
_5145
PfGW456L13_5146 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) <small>(from data)</small>, at 5,742,167 to 5,743,693
_5146
Position (kb) 5741
5742
5743 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5740.276 kb on + strand at 5740.276 kb on + strand at 5740.276 kb on + strand at 5740.276 kb on + strand at 5740.277 kb on - strand at 5740.277 kb on - strand at 5740.277 kb on - strand at 5740.277 kb on - strand at 5740.277 kb on - strand at 5740.277 kb on - strand at 5740.277 kb on - strand at 5740.375 kb on + strand, within PfGW456L13_5143 at 5740.375 kb on + strand, within PfGW456L13_5143 at 5740.375 kb on + strand, within PfGW456L13_5143 at 5740.376 kb on - strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.384 kb on + strand, within PfGW456L13_5143 at 5740.385 kb on - strand, within PfGW456L13_5143 at 5740.385 kb on - strand, within PfGW456L13_5143 at 5740.385 kb on - strand, within PfGW456L13_5143 at 5740.385 kb on - strand, within PfGW456L13_5143 at 5740.494 kb on - strand, within PfGW456L13_5143 at 5740.494 kb on - strand, within PfGW456L13_5143 at 5740.494 kb on - strand, within PfGW456L13_5143 at 5740.708 kb on + strand at 5740.708 kb on + strand at 5740.708 kb on + strand at 5740.708 kb on + strand at 5740.708 kb on + strand at 5740.709 kb on - strand at 5740.709 kb on - strand at 5740.709 kb on - strand at 5740.709 kb on - strand at 5740.765 kb on + strand at 5740.770 kb on + strand at 5740.770 kb on + strand at 5740.771 kb on - strand at 5740.860 kb on - strand, within PfGW456L13_5144 at 5740.919 kb on + strand, within PfGW456L13_5144 at 5740.919 kb on + strand, within PfGW456L13_5144 at 5740.919 kb on + strand, within PfGW456L13_5144 at 5740.919 kb on + strand, within PfGW456L13_5144 at 5740.928 kb on + strand, within PfGW456L13_5144 at 5740.928 kb on + strand, within PfGW456L13_5144 at 5740.928 kb on + strand, within PfGW456L13_5144 at 5740.928 kb on + strand, within PfGW456L13_5144 at 5740.928 kb on + strand, within PfGW456L13_5144 at 5740.929 kb on - strand, within PfGW456L13_5144 at 5740.929 kb on - strand, within PfGW456L13_5144 at 5740.929 kb on - strand, within PfGW456L13_5144 at 5740.929 kb on - strand, within PfGW456L13_5144 at 5740.929 kb on - strand, within PfGW456L13_5144 at 5740.943 kb on + strand, within PfGW456L13_5144 at 5740.943 kb on + strand, within PfGW456L13_5144 at 5740.944 kb on - strand, within PfGW456L13_5144 at 5740.964 kb on + strand, within PfGW456L13_5144 at 5740.964 kb on + strand, within PfGW456L13_5144 at 5741.079 kb on - strand at 5741.096 kb on + strand at 5741.139 kb on + strand at 5741.139 kb on + strand at 5741.140 kb on - strand at 5741.140 kb on - strand at 5741.150 kb on - strand at 5741.218 kb on + strand at 5741.270 kb on + strand at 5741.270 kb on + strand at 5741.271 kb on - strand at 5741.345 kb on + strand at 5741.345 kb on + strand at 5741.346 kb on - strand at 5741.346 kb on - strand at 5741.456 kb on + strand, within PfGW456L13_5145 at 5741.457 kb on - strand, within PfGW456L13_5145 at 5741.504 kb on + strand, within PfGW456L13_5145 at 5741.504 kb on + strand, within PfGW456L13_5145 at 5741.504 kb on + strand, within PfGW456L13_5145 at 5741.504 kb on + strand, within PfGW456L13_5145 at 5741.504 kb on + strand, within PfGW456L13_5145 at 5741.504 kb on + strand, within PfGW456L13_5145 at 5741.504 kb on + strand, within PfGW456L13_5145 at 5741.505 kb on - strand, within PfGW456L13_5145 at 5741.505 kb on - strand, within PfGW456L13_5145 at 5741.505 kb on - strand, within PfGW456L13_5145 at 5741.505 kb on - strand, within PfGW456L13_5145 at 5741.505 kb on - strand, within PfGW456L13_5145 at 5741.505 kb on - strand, within PfGW456L13_5145 at 5741.505 kb on - strand, within PfGW456L13_5145 at 5741.754 kb on + strand, within PfGW456L13_5145 at 5741.755 kb on - strand, within PfGW456L13_5145 at 5741.755 kb on - strand, within PfGW456L13_5145 at 5741.755 kb on - strand, within PfGW456L13_5145 at 5741.755 kb on - strand, within PfGW456L13_5145 at 5742.141 kb on + strand at 5742.252 kb on + strand at 5742.253 kb on - strand at 5742.253 kb on - strand at 5742.253 kb on - strand at 5742.481 kb on + strand, within PfGW456L13_5146 at 5742.481 kb on + strand, within PfGW456L13_5146 at 5742.481 kb on + strand, within PfGW456L13_5146 at 5742.482 kb on - strand, within PfGW456L13_5146 at 5742.482 kb on - strand, within PfGW456L13_5146 at 5742.482 kb on - strand, within PfGW456L13_5146 at 5742.484 kb on + strand, within PfGW456L13_5146 at 5742.528 kb on + strand, within PfGW456L13_5146 at 5742.528 kb on + strand, within PfGW456L13_5146 at 5742.529 kb on - strand, within PfGW456L13_5146 at 5742.529 kb on - strand, within PfGW456L13_5146 at 5742.529 kb on - strand, within PfGW456L13_5146 at 5742.529 kb on - strand, within PfGW456L13_5146 at 5742.960 kb on + strand, within PfGW456L13_5146 at 5742.960 kb on + strand, within PfGW456L13_5146 at 5742.961 kb on - strand, within PfGW456L13_5146 at 5743.009 kb on + strand, within PfGW456L13_5146 at 5743.009 kb on + strand, within PfGW456L13_5146 at 5743.009 kb on + strand, within PfGW456L13_5146 at 5743.009 kb on + strand, within PfGW456L13_5146 at 5743.010 kb on - strand, within PfGW456L13_5146 at 5743.010 kb on - strand, within PfGW456L13_5146
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,740,276 + -0.6 5,740,276 + +0.5 5,740,276 + -0.0 5,740,276 + -0.7 5,740,277 - +0.2 5,740,277 - +0.4 5,740,277 - -0.1 5,740,277 - -0.2 5,740,277 - -0.4 5,740,277 - -0.6 5,740,277 - +0.8 5,740,375 + PfGW456L13_5143 0.27 -0.4 5,740,375 + PfGW456L13_5143 0.27 +0.5 5,740,375 + PfGW456L13_5143 0.27 +1.0 5,740,376 - PfGW456L13_5143 0.28 +0.3 5,740,384 + PfGW456L13_5143 0.30 -0.4 5,740,384 + PfGW456L13_5143 0.30 +0.1 5,740,384 + PfGW456L13_5143 0.30 -0.6 5,740,384 + PfGW456L13_5143 0.30 -0.7 5,740,384 + PfGW456L13_5143 0.30 +0.9 5,740,384 + PfGW456L13_5143 0.30 +1.1 5,740,384 + PfGW456L13_5143 0.30 +0.8 5,740,384 + PfGW456L13_5143 0.30 +0.2 5,740,384 + PfGW456L13_5143 0.30 -0.2 5,740,384 + PfGW456L13_5143 0.30 +0.6 5,740,385 - PfGW456L13_5143 0.30 -0.6 5,740,385 - PfGW456L13_5143 0.30 +0.6 5,740,385 - PfGW456L13_5143 0.30 -1.1 5,740,385 - PfGW456L13_5143 0.30 -1.3 5,740,494 - PfGW456L13_5143 0.59 -0.2 5,740,494 - PfGW456L13_5143 0.59 +0.5 5,740,494 - PfGW456L13_5143 0.59 +0.1 5,740,708 + +0.5 5,740,708 + +0.1 5,740,708 + +0.3 5,740,708 + -0.1 5,740,708 + -1.1 5,740,709 - -0.1 5,740,709 - -1.0 5,740,709 - +0.1 5,740,709 - +0.1 5,740,765 + +0.5 5,740,770 + +0.8 5,740,770 + -0.8 5,740,771 - +0.6 5,740,860 - PfGW456L13_5144 0.32 +0.2 5,740,919 + PfGW456L13_5144 0.49 -0.6 5,740,919 + PfGW456L13_5144 0.49 +0.2 5,740,919 + PfGW456L13_5144 0.49 +0.8 5,740,919 + PfGW456L13_5144 0.49 +2.3 5,740,928 + PfGW456L13_5144 0.51 +0.2 5,740,928 + PfGW456L13_5144 0.51 -0.9 5,740,928 + PfGW456L13_5144 0.51 -0.7 5,740,928 + PfGW456L13_5144 0.51 +0.3 5,740,928 + PfGW456L13_5144 0.51 +0.8 5,740,929 - PfGW456L13_5144 0.52 -0.4 5,740,929 - PfGW456L13_5144 0.52 -0.6 5,740,929 - PfGW456L13_5144 0.52 +0.5 5,740,929 - PfGW456L13_5144 0.52 +0.9 5,740,929 - PfGW456L13_5144 0.52 -0.8 5,740,943 + PfGW456L13_5144 0.56 -0.5 5,740,943 + PfGW456L13_5144 0.56 -0.6 5,740,944 - PfGW456L13_5144 0.56 +0.6 5,740,964 + PfGW456L13_5144 0.62 +0.7 5,740,964 + PfGW456L13_5144 0.62 -0.3 5,741,079 - +0.4 5,741,096 + -0.3 5,741,139 + +0.0 5,741,139 + +0.7 5,741,140 - -0.5 5,741,140 - +0.2 5,741,150 - +0.2 5,741,218 + -0.0 5,741,270 + -0.1 5,741,270 + +0.3 5,741,271 - -0.3 5,741,345 + -0.9 5,741,345 + +0.6 5,741,346 - +0.0 5,741,346 - -0.3 5,741,456 + PfGW456L13_5145 0.21 -2.3 5,741,457 - PfGW456L13_5145 0.21 -0.7 5,741,504 + PfGW456L13_5145 0.26 -0.4 5,741,504 + PfGW456L13_5145 0.26 +0.9 5,741,504 + PfGW456L13_5145 0.26 -0.7 5,741,504 + PfGW456L13_5145 0.26 -1.1 5,741,504 + PfGW456L13_5145 0.26 -0.1 5,741,504 + PfGW456L13_5145 0.26 -0.6 5,741,504 + PfGW456L13_5145 0.26 -1.1 5,741,505 - PfGW456L13_5145 0.27 -0.5 5,741,505 - PfGW456L13_5145 0.27 +0.3 5,741,505 - PfGW456L13_5145 0.27 -1.0 5,741,505 - PfGW456L13_5145 0.27 -1.3 5,741,505 - PfGW456L13_5145 0.27 -1.8 5,741,505 - PfGW456L13_5145 0.27 -0.7 5,741,505 - PfGW456L13_5145 0.27 +0.1 5,741,754 + PfGW456L13_5145 0.55 -0.3 5,741,755 - PfGW456L13_5145 0.55 -0.0 5,741,755 - PfGW456L13_5145 0.55 -0.6 5,741,755 - PfGW456L13_5145 0.55 -0.6 5,741,755 - PfGW456L13_5145 0.55 -0.4 5,742,141 + -0.1 5,742,252 + -0.4 5,742,253 - -1.0 5,742,253 - -1.2 5,742,253 - +0.0 5,742,481 + PfGW456L13_5146 0.21 +1.3 5,742,481 + PfGW456L13_5146 0.21 +0.1 5,742,481 + PfGW456L13_5146 0.21 -0.6 5,742,482 - PfGW456L13_5146 0.21 +0.7 5,742,482 - PfGW456L13_5146 0.21 +0.1 5,742,482 - PfGW456L13_5146 0.21 -0.7 5,742,484 + PfGW456L13_5146 0.21 -0.4 5,742,528 + PfGW456L13_5146 0.24 +0.4 5,742,528 + PfGW456L13_5146 0.24 -1.6 5,742,529 - PfGW456L13_5146 0.24 -0.3 5,742,529 - PfGW456L13_5146 0.24 +0.2 5,742,529 - PfGW456L13_5146 0.24 -0.1 5,742,529 - PfGW456L13_5146 0.24 +0.2 5,742,960 + PfGW456L13_5146 0.52 +0.3 5,742,960 + PfGW456L13_5146 0.52 -1.4 5,742,961 - PfGW456L13_5146 0.52 -1.5 5,743,009 + PfGW456L13_5146 0.55 -0.9 5,743,009 + PfGW456L13_5146 0.55 -1.8 5,743,009 + PfGW456L13_5146 0.55 -0.6 5,743,009 + PfGW456L13_5146 0.55 +0.5 5,743,010 - PfGW456L13_5146 0.55 -1.0 5,743,010 - PfGW456L13_5146 0.55 -0.6
Or see this region's nucleotide sequence