Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_419 and PfGW456L13_420 are separated by 59 nucleotides PfGW456L13_420 and PfGW456L13_421 are separated by 18 nucleotides PfGW456L13_421 and PfGW456L13_422 are separated by 48 nucleotides
PfGW456L13_419 - hypothetical protein, at 482,110 to 484,425
_419
PfGW456L13_420 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49), at 484,485 to 486,026
_420
PfGW456L13_421 - hypothetical protein, at 486,045 to 486,158
_421
PfGW456L13_422 - 33 kDa chaperonin (Heat shock protein 33) (HSP33), at 486,207 to 487,109
_422
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 483.571 kb on - strand, within PfGW456L13_419 at 483.640 kb on + strand, within PfGW456L13_419 at 483.738 kb on - strand, within PfGW456L13_419 at 483.770 kb on + strand, within PfGW456L13_419 at 483.897 kb on - strand, within PfGW456L13_419 at 484.033 kb on + strand, within PfGW456L13_419 at 484.083 kb on - strand, within PfGW456L13_419 at 484.354 kb on + strand at 484.355 kb on - strand at 484.357 kb on - strand at 484.802 kb on - strand, within PfGW456L13_420 at 484.849 kb on + strand, within PfGW456L13_420 at 485.254 kb on + strand, within PfGW456L13_420 at 485.633 kb on - strand, within PfGW456L13_420 at 486.002 kb on - strand at 486.072 kb on - strand, within PfGW456L13_421 at 486.075 kb on - strand, within PfGW456L13_421 at 486.090 kb on - strand, within PfGW456L13_421 at 486.090 kb on - strand, within PfGW456L13_421 at 486.093 kb on - strand, within PfGW456L13_421 at 486.140 kb on + strand, within PfGW456L13_421 at 486.141 kb on - strand, within PfGW456L13_421 at 486.156 kb on + strand at 486.165 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 483,571 - PfGW456L13_419 0.63 -0.3 483,640 + PfGW456L13_419 0.66 +0.8 483,738 - PfGW456L13_419 0.70 +0.5 483,770 + PfGW456L13_419 0.72 +1.0 483,897 - PfGW456L13_419 0.77 -1.0 484,033 + PfGW456L13_419 0.83 +0.1 484,083 - PfGW456L13_419 0.85 +0.1 484,354 + -1.4 484,355 - -0.1 484,357 - -0.5 484,802 - PfGW456L13_420 0.21 -0.5 484,849 + PfGW456L13_420 0.24 -2.5 485,254 + PfGW456L13_420 0.50 -0.5 485,633 - PfGW456L13_420 0.74 -3.3 486,002 - -1.3 486,072 - PfGW456L13_421 0.24 +0.7 486,075 - PfGW456L13_421 0.26 +0.8 486,090 - PfGW456L13_421 0.39 -0.4 486,090 - PfGW456L13_421 0.39 +1.2 486,093 - PfGW456L13_421 0.42 +0.7 486,140 + PfGW456L13_421 0.83 -1.6 486,141 - PfGW456L13_421 0.84 +0.2 486,156 + +0.6 486,165 + -0.6
Or see this region's nucleotide sequence