Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3902 and PfGW456L13_3903 are separated by 70 nucleotides PfGW456L13_3903 and PfGW456L13_3904 are separated by 165 nucleotides PfGW456L13_3904 and PfGW456L13_3905 are separated by 132 nucleotides PfGW456L13_3905 and PfGW456L13_3906 are separated by 33 nucleotides
PfGW456L13_3902 - Cold shock protein CspG, at 4,378,347 to 4,378,559
_3902
PfGW456L13_3903 - lipoprotein, putative, at 4,378,630 to 4,378,950
_3903
PfGW456L13_3904 - FIG00955358: hypothetical protein, at 4,379,116 to 4,379,421
_3904
PfGW456L13_3905 - hypothetical protein, at 4,379,554 to 4,379,766
_3905
PfGW456L13_3906 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 4,379,800 to 4,380,777
_3906
Position (kb)
4379
4380 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4378.558 kb on - strand at 4378.558 kb on - strand at 4378.698 kb on - strand, within PfGW456L13_3903 at 4378.923 kb on + strand at 4378.962 kb on - strand at 4378.972 kb on + strand at 4378.973 kb on - strand at 4379.082 kb on + strand at 4379.083 kb on - strand at 4379.083 kb on - strand at 4379.083 kb on - strand at 4379.104 kb on + strand at 4379.105 kb on - strand at 4379.105 kb on - strand at 4379.105 kb on - strand at 4379.105 kb on - strand at 4379.120 kb on + strand at 4379.120 kb on + strand at 4379.120 kb on + strand at 4379.121 kb on - strand at 4379.132 kb on + strand at 4379.132 kb on + strand at 4379.133 kb on - strand at 4379.133 kb on - strand at 4379.133 kb on - strand at 4379.138 kb on + strand at 4379.139 kb on - strand at 4379.139 kb on - strand at 4379.303 kb on + strand, within PfGW456L13_3904 at 4379.303 kb on + strand, within PfGW456L13_3904 at 4379.303 kb on + strand, within PfGW456L13_3904 at 4379.303 kb on + strand, within PfGW456L13_3904 at 4379.303 kb on + strand, within PfGW456L13_3904 at 4379.303 kb on + strand, within PfGW456L13_3904 at 4379.304 kb on - strand, within PfGW456L13_3904 at 4379.304 kb on - strand, within PfGW456L13_3904 at 4379.304 kb on - strand, within PfGW456L13_3904 at 4379.304 kb on - strand, within PfGW456L13_3904 at 4379.437 kb on + strand at 4379.438 kb on - strand at 4379.481 kb on - strand at 4379.514 kb on - strand at 4379.564 kb on + strand at 4379.564 kb on + strand at 4379.565 kb on - strand at 4379.614 kb on + strand, within PfGW456L13_3905 at 4379.726 kb on + strand, within PfGW456L13_3905 at 4379.726 kb on + strand, within PfGW456L13_3905 at 4379.727 kb on - strand, within PfGW456L13_3905 at 4379.751 kb on + strand at 4379.754 kb on + strand at 4379.755 kb on - strand at 4379.755 kb on - strand at 4379.755 kb on - strand at 4379.764 kb on + strand at 4379.764 kb on + strand at 4379.764 kb on + strand at 4379.764 kb on + strand at 4379.765 kb on - strand at 4379.765 kb on - strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.801 kb on + strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.802 kb on - strand at 4379.900 kb on + strand, within PfGW456L13_3906 at 4379.900 kb on + strand, within PfGW456L13_3906 at 4379.996 kb on + strand, within PfGW456L13_3906 at 4379.996 kb on + strand, within PfGW456L13_3906 at 4379.997 kb on - strand at 4380.041 kb on + strand, within PfGW456L13_3906 at 4380.065 kb on + strand, within PfGW456L13_3906 at 4380.065 kb on + strand, within PfGW456L13_3906 at 4380.065 kb on + strand, within PfGW456L13_3906 at 4380.065 kb on + strand, within PfGW456L13_3906 at 4380.065 kb on + strand, within PfGW456L13_3906 at 4380.065 kb on + strand, within PfGW456L13_3906 at 4380.065 kb on + strand, within PfGW456L13_3906 at 4380.066 kb on - strand, within PfGW456L13_3906 at 4380.066 kb on - strand, within PfGW456L13_3906 at 4380.066 kb on - strand, within PfGW456L13_3906 at 4380.066 kb on - strand, within PfGW456L13_3906 at 4380.144 kb on + strand, within PfGW456L13_3906 at 4380.176 kb on + strand, within PfGW456L13_3906 at 4380.176 kb on + strand, within PfGW456L13_3906 at 4380.176 kb on + strand, within PfGW456L13_3906 at 4380.176 kb on + strand, within PfGW456L13_3906 at 4380.176 kb on + strand, within PfGW456L13_3906 at 4380.177 kb on - strand, within PfGW456L13_3906 at 4380.177 kb on - strand, within PfGW456L13_3906 at 4380.177 kb on - strand, within PfGW456L13_3906 at 4380.177 kb on - strand, within PfGW456L13_3906 at 4380.319 kb on - strand, within PfGW456L13_3906 at 4380.378 kb on + strand, within PfGW456L13_3906 at 4380.419 kb on + strand, within PfGW456L13_3906 at 4380.419 kb on + strand, within PfGW456L13_3906 at 4380.419 kb on + strand, within PfGW456L13_3906 at 4380.420 kb on - strand, within PfGW456L13_3906 at 4380.420 kb on - strand, within PfGW456L13_3906 at 4380.420 kb on - strand, within PfGW456L13_3906 at 4380.420 kb on - strand, within PfGW456L13_3906 at 4380.420 kb on - strand, within PfGW456L13_3906 at 4380.509 kb on + strand, within PfGW456L13_3906 at 4380.509 kb on + strand, within PfGW456L13_3906 at 4380.549 kb on - strand, within PfGW456L13_3906
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,378,558 - -0.6 4,378,558 - -1.2 4,378,698 - PfGW456L13_3903 0.21 -0.2 4,378,923 + -0.3 4,378,962 - +0.2 4,378,972 + -2.1 4,378,973 - -0.8 4,379,082 + +0.4 4,379,083 - -0.5 4,379,083 - +0.3 4,379,083 - -0.3 4,379,104 + -0.5 4,379,105 - -0.0 4,379,105 - +0.1 4,379,105 - +0.3 4,379,105 - +0.5 4,379,120 + +0.7 4,379,120 + +0.3 4,379,120 + +1.0 4,379,121 - +0.1 4,379,132 + +0.6 4,379,132 + +0.6 4,379,133 - +0.1 4,379,133 - -0.0 4,379,133 - +1.0 4,379,138 + -0.4 4,379,139 - -0.1 4,379,139 - +0.5 4,379,303 + PfGW456L13_3904 0.61 +0.8 4,379,303 + PfGW456L13_3904 0.61 -0.3 4,379,303 + PfGW456L13_3904 0.61 +0.9 4,379,303 + PfGW456L13_3904 0.61 +0.0 4,379,303 + PfGW456L13_3904 0.61 -0.2 4,379,303 + PfGW456L13_3904 0.61 -1.0 4,379,304 - PfGW456L13_3904 0.61 +0.5 4,379,304 - PfGW456L13_3904 0.61 +0.1 4,379,304 - PfGW456L13_3904 0.61 +1.2 4,379,304 - PfGW456L13_3904 0.61 +0.7 4,379,437 + -1.3 4,379,438 - -0.5 4,379,481 - +0.1 4,379,514 - -0.9 4,379,564 + +0.2 4,379,564 + +0.8 4,379,565 - +1.1 4,379,614 + PfGW456L13_3905 0.28 -0.2 4,379,726 + PfGW456L13_3905 0.81 -2.5 4,379,726 + PfGW456L13_3905 0.81 -0.8 4,379,727 - PfGW456L13_3905 0.81 -0.3 4,379,751 + -0.3 4,379,754 + -2.1 4,379,755 - +0.5 4,379,755 - +0.9 4,379,755 - +0.1 4,379,764 + +0.1 4,379,764 + +0.4 4,379,764 + +0.3 4,379,764 + -1.3 4,379,765 - -0.7 4,379,765 - +0.4 4,379,801 + -0.6 4,379,801 + -0.8 4,379,801 + +1.1 4,379,801 + +1.3 4,379,801 + +0.8 4,379,801 + +0.2 4,379,801 + +0.9 4,379,801 + +0.1 4,379,801 + +0.2 4,379,801 + -3.3 4,379,801 + -0.6 4,379,801 + +1.8 4,379,802 - +0.1 4,379,802 - -0.8 4,379,802 - -0.0 4,379,802 - -0.3 4,379,802 - -0.6 4,379,802 - +1.0 4,379,802 - +0.2 4,379,802 - +0.4 4,379,802 - -0.3 4,379,802 - +0.5 4,379,900 + PfGW456L13_3906 0.10 +0.5 4,379,900 + PfGW456L13_3906 0.10 +0.4 4,379,996 + PfGW456L13_3906 0.20 +0.3 4,379,996 + PfGW456L13_3906 0.20 -0.5 4,379,997 - +0.8 4,380,041 + PfGW456L13_3906 0.25 +0.3 4,380,065 + PfGW456L13_3906 0.27 +0.5 4,380,065 + PfGW456L13_3906 0.27 +0.1 4,380,065 + PfGW456L13_3906 0.27 +1.2 4,380,065 + PfGW456L13_3906 0.27 +0.3 4,380,065 + PfGW456L13_3906 0.27 +0.8 4,380,065 + PfGW456L13_3906 0.27 +1.0 4,380,065 + PfGW456L13_3906 0.27 -0.2 4,380,066 - PfGW456L13_3906 0.27 +0.5 4,380,066 - PfGW456L13_3906 0.27 +0.4 4,380,066 - PfGW456L13_3906 0.27 -1.3 4,380,066 - PfGW456L13_3906 0.27 +0.0 4,380,144 + PfGW456L13_3906 0.35 +0.0 4,380,176 + PfGW456L13_3906 0.38 +0.2 4,380,176 + PfGW456L13_3906 0.38 -0.8 4,380,176 + PfGW456L13_3906 0.38 -0.1 4,380,176 + PfGW456L13_3906 0.38 -0.2 4,380,176 + PfGW456L13_3906 0.38 -1.0 4,380,177 - PfGW456L13_3906 0.39 +0.1 4,380,177 - PfGW456L13_3906 0.39 +0.5 4,380,177 - PfGW456L13_3906 0.39 -1.3 4,380,177 - PfGW456L13_3906 0.39 +0.3 4,380,319 - PfGW456L13_3906 0.53 +0.9 4,380,378 + PfGW456L13_3906 0.59 +0.4 4,380,419 + PfGW456L13_3906 0.63 -0.6 4,380,419 + PfGW456L13_3906 0.63 -0.2 4,380,419 + PfGW456L13_3906 0.63 -0.2 4,380,420 - PfGW456L13_3906 0.63 +0.7 4,380,420 - PfGW456L13_3906 0.63 -0.7 4,380,420 - PfGW456L13_3906 0.63 -0.0 4,380,420 - PfGW456L13_3906 0.63 +0.3 4,380,420 - PfGW456L13_3906 0.63 +0.3 4,380,509 + PfGW456L13_3906 0.72 +0.8 4,380,509 + PfGW456L13_3906 0.72 +0.5 4,380,549 - PfGW456L13_3906 0.77 +0.1
Or see this region's nucleotide sequence