Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3905

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3902 and PfGW456L13_3903 are separated by 70 nucleotidesPfGW456L13_3903 and PfGW456L13_3904 are separated by 165 nucleotidesPfGW456L13_3904 and PfGW456L13_3905 are separated by 132 nucleotidesPfGW456L13_3905 and PfGW456L13_3906 are separated by 33 nucleotides PfGW456L13_3902 - Cold shock protein CspG, at 4,378,347 to 4,378,559 _3902 PfGW456L13_3903 - lipoprotein, putative, at 4,378,630 to 4,378,950 _3903 PfGW456L13_3904 - FIG00955358: hypothetical protein, at 4,379,116 to 4,379,421 _3904 PfGW456L13_3905 - hypothetical protein, at 4,379,554 to 4,379,766 _3905 PfGW456L13_3906 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 4,379,800 to 4,380,777 _3906 Position (kb) 4379 4380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4378.558 kb on - strandat 4378.558 kb on - strandat 4378.698 kb on - strand, within PfGW456L13_3903at 4378.923 kb on + strandat 4378.962 kb on - strandat 4378.972 kb on + strandat 4378.973 kb on - strandat 4379.082 kb on + strandat 4379.083 kb on - strandat 4379.083 kb on - strandat 4379.083 kb on - strandat 4379.104 kb on + strandat 4379.105 kb on - strandat 4379.105 kb on - strandat 4379.105 kb on - strandat 4379.105 kb on - strandat 4379.120 kb on + strandat 4379.120 kb on + strandat 4379.120 kb on + strandat 4379.121 kb on - strandat 4379.132 kb on + strandat 4379.132 kb on + strandat 4379.133 kb on - strandat 4379.133 kb on - strandat 4379.133 kb on - strandat 4379.138 kb on + strandat 4379.139 kb on - strandat 4379.139 kb on - strandat 4379.303 kb on + strand, within PfGW456L13_3904at 4379.303 kb on + strand, within PfGW456L13_3904at 4379.303 kb on + strand, within PfGW456L13_3904at 4379.303 kb on + strand, within PfGW456L13_3904at 4379.303 kb on + strand, within PfGW456L13_3904at 4379.303 kb on + strand, within PfGW456L13_3904at 4379.304 kb on - strand, within PfGW456L13_3904at 4379.304 kb on - strand, within PfGW456L13_3904at 4379.304 kb on - strand, within PfGW456L13_3904at 4379.304 kb on - strand, within PfGW456L13_3904at 4379.437 kb on + strandat 4379.438 kb on - strandat 4379.481 kb on - strandat 4379.514 kb on - strandat 4379.564 kb on + strandat 4379.564 kb on + strandat 4379.565 kb on - strandat 4379.614 kb on + strand, within PfGW456L13_3905at 4379.726 kb on + strand, within PfGW456L13_3905at 4379.726 kb on + strand, within PfGW456L13_3905at 4379.727 kb on - strand, within PfGW456L13_3905at 4379.751 kb on + strandat 4379.754 kb on + strandat 4379.755 kb on - strandat 4379.755 kb on - strandat 4379.755 kb on - strandat 4379.764 kb on + strandat 4379.764 kb on + strandat 4379.764 kb on + strandat 4379.764 kb on + strandat 4379.765 kb on - strandat 4379.765 kb on - strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.801 kb on + strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.802 kb on - strandat 4379.900 kb on + strand, within PfGW456L13_3906at 4379.900 kb on + strand, within PfGW456L13_3906at 4379.996 kb on + strand, within PfGW456L13_3906at 4379.996 kb on + strand, within PfGW456L13_3906at 4379.997 kb on - strandat 4380.041 kb on + strand, within PfGW456L13_3906at 4380.065 kb on + strand, within PfGW456L13_3906at 4380.065 kb on + strand, within PfGW456L13_3906at 4380.065 kb on + strand, within PfGW456L13_3906at 4380.065 kb on + strand, within PfGW456L13_3906at 4380.065 kb on + strand, within PfGW456L13_3906at 4380.065 kb on + strand, within PfGW456L13_3906at 4380.065 kb on + strand, within PfGW456L13_3906at 4380.066 kb on - strand, within PfGW456L13_3906at 4380.066 kb on - strand, within PfGW456L13_3906at 4380.066 kb on - strand, within PfGW456L13_3906at 4380.066 kb on - strand, within PfGW456L13_3906at 4380.144 kb on + strand, within PfGW456L13_3906at 4380.176 kb on + strand, within PfGW456L13_3906at 4380.176 kb on + strand, within PfGW456L13_3906at 4380.176 kb on + strand, within PfGW456L13_3906at 4380.176 kb on + strand, within PfGW456L13_3906at 4380.176 kb on + strand, within PfGW456L13_3906at 4380.177 kb on - strand, within PfGW456L13_3906at 4380.177 kb on - strand, within PfGW456L13_3906at 4380.177 kb on - strand, within PfGW456L13_3906at 4380.177 kb on - strand, within PfGW456L13_3906at 4380.319 kb on - strand, within PfGW456L13_3906at 4380.378 kb on + strand, within PfGW456L13_3906at 4380.419 kb on + strand, within PfGW456L13_3906at 4380.419 kb on + strand, within PfGW456L13_3906at 4380.419 kb on + strand, within PfGW456L13_3906at 4380.420 kb on - strand, within PfGW456L13_3906at 4380.420 kb on - strand, within PfGW456L13_3906at 4380.420 kb on - strand, within PfGW456L13_3906at 4380.420 kb on - strand, within PfGW456L13_3906at 4380.420 kb on - strand, within PfGW456L13_3906at 4380.509 kb on + strand, within PfGW456L13_3906at 4380.509 kb on + strand, within PfGW456L13_3906at 4380.549 kb on - strand, within PfGW456L13_3906

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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4,378,558 - -0.6
4,378,558 - -1.2
4,378,698 - PfGW456L13_3903 0.21 -0.2
4,378,923 + -0.3
4,378,962 - +0.2
4,378,972 + -2.1
4,378,973 - -0.8
4,379,082 + +0.4
4,379,083 - -0.5
4,379,083 - +0.3
4,379,083 - -0.3
4,379,104 + -0.5
4,379,105 - -0.0
4,379,105 - +0.1
4,379,105 - +0.3
4,379,105 - +0.5
4,379,120 + +0.7
4,379,120 + +0.3
4,379,120 + +1.0
4,379,121 - +0.1
4,379,132 + +0.6
4,379,132 + +0.6
4,379,133 - +0.1
4,379,133 - -0.0
4,379,133 - +1.0
4,379,138 + -0.4
4,379,139 - -0.1
4,379,139 - +0.5
4,379,303 + PfGW456L13_3904 0.61 +0.8
4,379,303 + PfGW456L13_3904 0.61 -0.3
4,379,303 + PfGW456L13_3904 0.61 +0.9
4,379,303 + PfGW456L13_3904 0.61 +0.0
4,379,303 + PfGW456L13_3904 0.61 -0.2
4,379,303 + PfGW456L13_3904 0.61 -1.0
4,379,304 - PfGW456L13_3904 0.61 +0.5
4,379,304 - PfGW456L13_3904 0.61 +0.1
4,379,304 - PfGW456L13_3904 0.61 +1.2
4,379,304 - PfGW456L13_3904 0.61 +0.7
4,379,437 + -1.3
4,379,438 - -0.5
4,379,481 - +0.1
4,379,514 - -0.9
4,379,564 + +0.2
4,379,564 + +0.8
4,379,565 - +1.1
4,379,614 + PfGW456L13_3905 0.28 -0.2
4,379,726 + PfGW456L13_3905 0.81 -2.5
4,379,726 + PfGW456L13_3905 0.81 -0.8
4,379,727 - PfGW456L13_3905 0.81 -0.3
4,379,751 + -0.3
4,379,754 + -2.1
4,379,755 - +0.5
4,379,755 - +0.9
4,379,755 - +0.1
4,379,764 + +0.1
4,379,764 + +0.4
4,379,764 + +0.3
4,379,764 + -1.3
4,379,765 - -0.7
4,379,765 - +0.4
4,379,801 + -0.6
4,379,801 + -0.8
4,379,801 + +1.1
4,379,801 + +1.3
4,379,801 + +0.8
4,379,801 + +0.2
4,379,801 + +0.9
4,379,801 + +0.1
4,379,801 + +0.2
4,379,801 + -3.3
4,379,801 + -0.6
4,379,801 + +1.8
4,379,802 - +0.1
4,379,802 - -0.8
4,379,802 - -0.0
4,379,802 - -0.3
4,379,802 - -0.6
4,379,802 - +1.0
4,379,802 - +0.2
4,379,802 - +0.4
4,379,802 - -0.3
4,379,802 - +0.5
4,379,900 + PfGW456L13_3906 0.10 +0.5
4,379,900 + PfGW456L13_3906 0.10 +0.4
4,379,996 + PfGW456L13_3906 0.20 +0.3
4,379,996 + PfGW456L13_3906 0.20 -0.5
4,379,997 - +0.8
4,380,041 + PfGW456L13_3906 0.25 +0.3
4,380,065 + PfGW456L13_3906 0.27 +0.5
4,380,065 + PfGW456L13_3906 0.27 +0.1
4,380,065 + PfGW456L13_3906 0.27 +1.2
4,380,065 + PfGW456L13_3906 0.27 +0.3
4,380,065 + PfGW456L13_3906 0.27 +0.8
4,380,065 + PfGW456L13_3906 0.27 +1.0
4,380,065 + PfGW456L13_3906 0.27 -0.2
4,380,066 - PfGW456L13_3906 0.27 +0.5
4,380,066 - PfGW456L13_3906 0.27 +0.4
4,380,066 - PfGW456L13_3906 0.27 -1.3
4,380,066 - PfGW456L13_3906 0.27 +0.0
4,380,144 + PfGW456L13_3906 0.35 +0.0
4,380,176 + PfGW456L13_3906 0.38 +0.2
4,380,176 + PfGW456L13_3906 0.38 -0.8
4,380,176 + PfGW456L13_3906 0.38 -0.1
4,380,176 + PfGW456L13_3906 0.38 -0.2
4,380,176 + PfGW456L13_3906 0.38 -1.0
4,380,177 - PfGW456L13_3906 0.39 +0.1
4,380,177 - PfGW456L13_3906 0.39 +0.5
4,380,177 - PfGW456L13_3906 0.39 -1.3
4,380,177 - PfGW456L13_3906 0.39 +0.3
4,380,319 - PfGW456L13_3906 0.53 +0.9
4,380,378 + PfGW456L13_3906 0.59 +0.4
4,380,419 + PfGW456L13_3906 0.63 -0.6
4,380,419 + PfGW456L13_3906 0.63 -0.2
4,380,419 + PfGW456L13_3906 0.63 -0.2
4,380,420 - PfGW456L13_3906 0.63 +0.7
4,380,420 - PfGW456L13_3906 0.63 -0.7
4,380,420 - PfGW456L13_3906 0.63 -0.0
4,380,420 - PfGW456L13_3906 0.63 +0.3
4,380,420 - PfGW456L13_3906 0.63 +0.3
4,380,509 + PfGW456L13_3906 0.72 +0.8
4,380,509 + PfGW456L13_3906 0.72 +0.5
4,380,549 - PfGW456L13_3906 0.77 +0.1

Or see this region's nucleotide sequence