Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3311 and PfGW456L13_3312 are separated by 115 nucleotides PfGW456L13_3312 and PfGW456L13_3313 are separated by 216 nucleotides PfGW456L13_3313 and PfGW456L13_3314 are separated by 156 nucleotides PfGW456L13_3314 and PfGW456L13_3315 overlap by 8 nucleotides PfGW456L13_3315 and PfGW456L13_3316 are separated by 119 nucleotides
PfGW456L13_3311 - hypothetical protein, at 3,722,041 to 3,722,253
_3311
PfGW456L13_3312 - hypothetical protein, at 3,722,369 to 3,722,494
_3312
PfGW456L13_3313 - FIG00957600: hypothetical protein, at 3,722,711 to 3,722,890
_3313
PfGW456L13_3314 - D-galactono-lactonase (EC 3.1.1.-) (from data) , at 3,723,047 to 3,724,216
_3314
PfGW456L13_3315 - FIG00955242: hypothetical protein, at 3,724,209 to 3,724,547
_3315
PfGW456L13_3316 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 3,724,667 to 3,726,247
_3316
Position (kb)
3723
3724
3725 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3722.195 kb on + strand, within PfGW456L13_3311 at 3722.214 kb on - strand, within PfGW456L13_3311 at 3722.329 kb on + strand at 3722.742 kb on + strand, within PfGW456L13_3313 at 3722.743 kb on - strand, within PfGW456L13_3313 at 3722.766 kb on + strand, within PfGW456L13_3313 at 3722.767 kb on - strand, within PfGW456L13_3313 at 3722.778 kb on + strand, within PfGW456L13_3313 at 3722.778 kb on + strand, within PfGW456L13_3313 at 3722.778 kb on + strand, within PfGW456L13_3313 at 3722.779 kb on - strand, within PfGW456L13_3313 at 3722.779 kb on - strand, within PfGW456L13_3313 at 3722.779 kb on - strand, within PfGW456L13_3313 at 3722.779 kb on - strand, within PfGW456L13_3313 at 3722.779 kb on - strand, within PfGW456L13_3313 at 3722.779 kb on - strand, within PfGW456L13_3313 at 3722.779 kb on - strand, within PfGW456L13_3313 at 3722.779 kb on - strand, within PfGW456L13_3313 at 3722.896 kb on + strand at 3722.948 kb on + strand at 3722.948 kb on + strand at 3722.982 kb on + strand at 3722.982 kb on + strand at 3722.982 kb on + strand at 3722.982 kb on + strand at 3722.982 kb on + strand at 3722.982 kb on + strand at 3722.982 kb on + strand at 3722.983 kb on - strand at 3722.983 kb on - strand at 3722.983 kb on - strand at 3722.995 kb on + strand at 3723.010 kb on + strand at 3723.010 kb on + strand at 3723.321 kb on + strand, within PfGW456L13_3314 at 3723.322 kb on - strand, within PfGW456L13_3314 at 3723.322 kb on - strand, within PfGW456L13_3314 at 3723.639 kb on + strand, within PfGW456L13_3314 at 3723.639 kb on + strand, within PfGW456L13_3314 at 3723.640 kb on - strand, within PfGW456L13_3314 at 3723.640 kb on - strand, within PfGW456L13_3314 at 3723.640 kb on - strand, within PfGW456L13_3314 at 3723.640 kb on - strand, within PfGW456L13_3314 at 3723.807 kb on + strand, within PfGW456L13_3314 at 3723.808 kb on - strand, within PfGW456L13_3314 at 3723.808 kb on - strand, within PfGW456L13_3314 at 3724.092 kb on + strand, within PfGW456L13_3314 at 3724.093 kb on - strand, within PfGW456L13_3314 at 3724.119 kb on + strand at 3724.141 kb on - strand at 3724.316 kb on + strand, within PfGW456L13_3315 at 3724.316 kb on + strand, within PfGW456L13_3315 at 3724.316 kb on + strand, within PfGW456L13_3315 at 3724.317 kb on - strand, within PfGW456L13_3315 at 3724.540 kb on + strand at 3724.540 kb on + strand at 3724.540 kb on + strand at 3724.540 kb on + strand at 3724.540 kb on + strand at 3724.540 kb on + strand at 3724.541 kb on - strand at 3724.541 kb on - strand at 3724.541 kb on - strand at 3724.564 kb on - strand at 3724.620 kb on + strand at 3724.621 kb on - strand at 3724.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 3,722,195 + PfGW456L13_3311 0.72 +0.3 3,722,214 - PfGW456L13_3311 0.81 +1.1 3,722,329 + -0.7 3,722,742 + PfGW456L13_3313 0.17 +0.5 3,722,743 - PfGW456L13_3313 0.18 +1.1 3,722,766 + PfGW456L13_3313 0.31 -0.4 3,722,767 - PfGW456L13_3313 0.31 +0.4 3,722,778 + PfGW456L13_3313 0.37 +1.7 3,722,778 + PfGW456L13_3313 0.37 +0.4 3,722,778 + PfGW456L13_3313 0.37 +0.9 3,722,779 - PfGW456L13_3313 0.38 +0.5 3,722,779 - PfGW456L13_3313 0.38 -0.6 3,722,779 - PfGW456L13_3313 0.38 +1.0 3,722,779 - PfGW456L13_3313 0.38 +0.3 3,722,779 - PfGW456L13_3313 0.38 +1.1 3,722,779 - PfGW456L13_3313 0.38 -0.8 3,722,779 - PfGW456L13_3313 0.38 +0.0 3,722,779 - PfGW456L13_3313 0.38 +0.2 3,722,896 + -0.7 3,722,948 + +1.2 3,722,948 + +0.9 3,722,982 + -1.0 3,722,982 + +0.8 3,722,982 + -0.3 3,722,982 + +0.1 3,722,982 + -0.4 3,722,982 + -0.2 3,722,982 + -0.3 3,722,983 - +1.8 3,722,983 - +0.9 3,722,983 - -2.0 3,722,995 + +0.7 3,723,010 + +0.2 3,723,010 + +0.4 3,723,321 + PfGW456L13_3314 0.23 +0.5 3,723,322 - PfGW456L13_3314 0.24 +0.4 3,723,322 - PfGW456L13_3314 0.24 -0.4 3,723,639 + PfGW456L13_3314 0.51 -0.1 3,723,639 + PfGW456L13_3314 0.51 +0.4 3,723,640 - PfGW456L13_3314 0.51 +0.7 3,723,640 - PfGW456L13_3314 0.51 +0.9 3,723,640 - PfGW456L13_3314 0.51 -0.7 3,723,640 - PfGW456L13_3314 0.51 +0.5 3,723,807 + PfGW456L13_3314 0.65 +1.3 3,723,808 - PfGW456L13_3314 0.65 +0.7 3,723,808 - PfGW456L13_3314 0.65 +1.1 3,724,092 + PfGW456L13_3314 0.89 -2.2 3,724,093 - PfGW456L13_3314 0.89 -0.3 3,724,119 + +1.0 3,724,141 - -0.4 3,724,316 + PfGW456L13_3315 0.32 -1.5 3,724,316 + PfGW456L13_3315 0.32 +0.4 3,724,316 + PfGW456L13_3315 0.32 +0.0 3,724,317 - PfGW456L13_3315 0.32 +0.4 3,724,540 + -1.7 3,724,540 + -0.1 3,724,540 + -1.7 3,724,540 + +0.1 3,724,540 + +0.0 3,724,540 + +1.1 3,724,541 - -0.3 3,724,541 - +0.3 3,724,541 - -1.6 3,724,564 - -0.1 3,724,620 + -0.1 3,724,621 - +0.7 3,724,669 - -0.0
Or see this region's nucleotide sequence