Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3314

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3311 and PfGW456L13_3312 are separated by 115 nucleotidesPfGW456L13_3312 and PfGW456L13_3313 are separated by 216 nucleotidesPfGW456L13_3313 and PfGW456L13_3314 are separated by 156 nucleotidesPfGW456L13_3314 and PfGW456L13_3315 overlap by 8 nucleotidesPfGW456L13_3315 and PfGW456L13_3316 are separated by 119 nucleotides PfGW456L13_3311 - hypothetical protein, at 3,722,041 to 3,722,253 _3311 PfGW456L13_3312 - hypothetical protein, at 3,722,369 to 3,722,494 _3312 PfGW456L13_3313 - FIG00957600: hypothetical protein, at 3,722,711 to 3,722,890 _3313 PfGW456L13_3314 - D-galactono-lactonase (EC 3.1.1.-) (from data), at 3,723,047 to 3,724,216 _3314 PfGW456L13_3315 - FIG00955242: hypothetical protein, at 3,724,209 to 3,724,547 _3315 PfGW456L13_3316 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 3,724,667 to 3,726,247 _3316 Position (kb) 3723 3724 3725Strain fitness (log2 ratio) -2 -1 0 1 2at 3722.195 kb on + strand, within PfGW456L13_3311at 3722.214 kb on - strand, within PfGW456L13_3311at 3722.329 kb on + strandat 3722.742 kb on + strand, within PfGW456L13_3313at 3722.743 kb on - strand, within PfGW456L13_3313at 3722.766 kb on + strand, within PfGW456L13_3313at 3722.767 kb on - strand, within PfGW456L13_3313at 3722.778 kb on + strand, within PfGW456L13_3313at 3722.778 kb on + strand, within PfGW456L13_3313at 3722.778 kb on + strand, within PfGW456L13_3313at 3722.779 kb on - strand, within PfGW456L13_3313at 3722.779 kb on - strand, within PfGW456L13_3313at 3722.779 kb on - strand, within PfGW456L13_3313at 3722.779 kb on - strand, within PfGW456L13_3313at 3722.779 kb on - strand, within PfGW456L13_3313at 3722.779 kb on - strand, within PfGW456L13_3313at 3722.779 kb on - strand, within PfGW456L13_3313at 3722.779 kb on - strand, within PfGW456L13_3313at 3722.896 kb on + strandat 3722.948 kb on + strandat 3722.948 kb on + strandat 3722.982 kb on + strandat 3722.982 kb on + strandat 3722.982 kb on + strandat 3722.982 kb on + strandat 3722.982 kb on + strandat 3722.982 kb on + strandat 3722.982 kb on + strandat 3722.983 kb on - strandat 3722.983 kb on - strandat 3722.983 kb on - strandat 3722.995 kb on + strandat 3723.010 kb on + strandat 3723.010 kb on + strandat 3723.321 kb on + strand, within PfGW456L13_3314at 3723.322 kb on - strand, within PfGW456L13_3314at 3723.322 kb on - strand, within PfGW456L13_3314at 3723.639 kb on + strand, within PfGW456L13_3314at 3723.639 kb on + strand, within PfGW456L13_3314at 3723.640 kb on - strand, within PfGW456L13_3314at 3723.640 kb on - strand, within PfGW456L13_3314at 3723.640 kb on - strand, within PfGW456L13_3314at 3723.640 kb on - strand, within PfGW456L13_3314at 3723.807 kb on + strand, within PfGW456L13_3314at 3723.808 kb on - strand, within PfGW456L13_3314at 3723.808 kb on - strand, within PfGW456L13_3314at 3724.092 kb on + strand, within PfGW456L13_3314at 3724.093 kb on - strand, within PfGW456L13_3314at 3724.119 kb on + strandat 3724.141 kb on - strandat 3724.316 kb on + strand, within PfGW456L13_3315at 3724.316 kb on + strand, within PfGW456L13_3315at 3724.316 kb on + strand, within PfGW456L13_3315at 3724.317 kb on - strand, within PfGW456L13_3315at 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.541 kb on - strandat 3724.541 kb on - strandat 3724.541 kb on - strandat 3724.564 kb on - strandat 3724.620 kb on + strandat 3724.621 kb on - strandat 3724.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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3,722,195 + PfGW456L13_3311 0.72 +0.3
3,722,214 - PfGW456L13_3311 0.81 +1.1
3,722,329 + -0.7
3,722,742 + PfGW456L13_3313 0.17 +0.5
3,722,743 - PfGW456L13_3313 0.18 +1.1
3,722,766 + PfGW456L13_3313 0.31 -0.4
3,722,767 - PfGW456L13_3313 0.31 +0.4
3,722,778 + PfGW456L13_3313 0.37 +1.7
3,722,778 + PfGW456L13_3313 0.37 +0.4
3,722,778 + PfGW456L13_3313 0.37 +0.9
3,722,779 - PfGW456L13_3313 0.38 +0.5
3,722,779 - PfGW456L13_3313 0.38 -0.6
3,722,779 - PfGW456L13_3313 0.38 +1.0
3,722,779 - PfGW456L13_3313 0.38 +0.3
3,722,779 - PfGW456L13_3313 0.38 +1.1
3,722,779 - PfGW456L13_3313 0.38 -0.8
3,722,779 - PfGW456L13_3313 0.38 +0.0
3,722,779 - PfGW456L13_3313 0.38 +0.2
3,722,896 + -0.7
3,722,948 + +1.2
3,722,948 + +0.9
3,722,982 + -1.0
3,722,982 + +0.8
3,722,982 + -0.3
3,722,982 + +0.1
3,722,982 + -0.4
3,722,982 + -0.2
3,722,982 + -0.3
3,722,983 - +1.8
3,722,983 - +0.9
3,722,983 - -2.0
3,722,995 + +0.7
3,723,010 + +0.2
3,723,010 + +0.4
3,723,321 + PfGW456L13_3314 0.23 +0.5
3,723,322 - PfGW456L13_3314 0.24 +0.4
3,723,322 - PfGW456L13_3314 0.24 -0.4
3,723,639 + PfGW456L13_3314 0.51 -0.1
3,723,639 + PfGW456L13_3314 0.51 +0.4
3,723,640 - PfGW456L13_3314 0.51 +0.7
3,723,640 - PfGW456L13_3314 0.51 +0.9
3,723,640 - PfGW456L13_3314 0.51 -0.7
3,723,640 - PfGW456L13_3314 0.51 +0.5
3,723,807 + PfGW456L13_3314 0.65 +1.3
3,723,808 - PfGW456L13_3314 0.65 +0.7
3,723,808 - PfGW456L13_3314 0.65 +1.1
3,724,092 + PfGW456L13_3314 0.89 -2.2
3,724,093 - PfGW456L13_3314 0.89 -0.3
3,724,119 + +1.0
3,724,141 - -0.4
3,724,316 + PfGW456L13_3315 0.32 -1.5
3,724,316 + PfGW456L13_3315 0.32 +0.4
3,724,316 + PfGW456L13_3315 0.32 +0.0
3,724,317 - PfGW456L13_3315 0.32 +0.4
3,724,540 + -1.7
3,724,540 + -0.1
3,724,540 + -1.7
3,724,540 + +0.1
3,724,540 + +0.0
3,724,540 + +1.1
3,724,541 - -0.3
3,724,541 - +0.3
3,724,541 - -1.6
3,724,564 - -0.1
3,724,620 + -0.1
3,724,621 - +0.7
3,724,669 - -0.0

Or see this region's nucleotide sequence