Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_282

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_281 and PfGW456L13_282 are separated by 322 nucleotidesPfGW456L13_282 and PfGW456L13_283 are separated by 230 nucleotides PfGW456L13_281 - Type IV pilus biogenesis protein PilM, at 328,381 to 329,445 _281 PfGW456L13_282 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 329,768 to 332,101 _282 PfGW456L13_283 - NADP-dependent malic enzyme (EC 1.1.1.40), at 332,332 to 333,600 _283 Position (kb) 329 330 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 328.796 kb on + strand, within PfGW456L13_281at 328.796 kb on + strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.800 kb on + strand, within PfGW456L13_281at 328.928 kb on + strand, within PfGW456L13_281at 329.096 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.330 kb on + strand, within PfGW456L13_281at 329.331 kb on - strand, within PfGW456L13_281at 329.331 kb on - strand, within PfGW456L13_281at 329.416 kb on - strandat 329.446 kb on + strandat 329.457 kb on + strandat 329.474 kb on + strandat 329.556 kb on - strandat 329.557 kb on + strandat 329.557 kb on + strandat 329.557 kb on + strandat 329.557 kb on + strandat 329.557 kb on + strandat 329.558 kb on - strandat 329.558 kb on - strandat 329.655 kb on + strandat 329.738 kb on + strandat 329.738 kb on + strandat 329.738 kb on + strandat 329.739 kb on - strandat 329.745 kb on - strandat 329.749 kb on + strandat 329.749 kb on + strandat 329.750 kb on - strandat 329.910 kb on + strandat 330.150 kb on - strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.165 kb on - strand, within PfGW456L13_282at 330.183 kb on - strand, within PfGW456L13_282at 330.209 kb on + strand, within PfGW456L13_282at 330.209 kb on + strand, within PfGW456L13_282at 330.209 kb on + strand, within PfGW456L13_282at 330.210 kb on - strand, within PfGW456L13_282at 330.210 kb on - strand, within PfGW456L13_282at 330.210 kb on - strand, within PfGW456L13_282at 330.213 kb on - strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.380 kb on + strand, within PfGW456L13_282at 330.416 kb on + strand, within PfGW456L13_282at 330.417 kb on - strand, within PfGW456L13_282at 330.417 kb on - strand, within PfGW456L13_282at 330.417 kb on - strand, within PfGW456L13_282at 330.449 kb on + strand, within PfGW456L13_282at 330.449 kb on + strand, within PfGW456L13_282at 330.449 kb on + strand, within PfGW456L13_282at 330.450 kb on - strand, within PfGW456L13_282at 330.489 kb on - strand, within PfGW456L13_282at 330.503 kb on + strand, within PfGW456L13_282at 330.503 kb on + strand, within PfGW456L13_282at 330.503 kb on + strand, within PfGW456L13_282at 330.504 kb on - strand, within PfGW456L13_282at 330.506 kb on - strand, within PfGW456L13_282at 330.738 kb on + strand, within PfGW456L13_282at 330.738 kb on + strand, within PfGW456L13_282at 330.738 kb on + strand, within PfGW456L13_282at 330.739 kb on - strand, within PfGW456L13_282at 331.004 kb on + strand, within PfGW456L13_282at 331.005 kb on - strand, within PfGW456L13_282at 331.005 kb on - strand, within PfGW456L13_282at 331.005 kb on - strand, within PfGW456L13_282at 331.137 kb on - strand, within PfGW456L13_282at 331.211 kb on + strand, within PfGW456L13_282at 331.211 kb on + strand, within PfGW456L13_282at 331.212 kb on - strand, within PfGW456L13_282at 331.212 kb on - strand, within PfGW456L13_282at 331.212 kb on - strand, within PfGW456L13_282at 331.277 kb on + strand, within PfGW456L13_282at 331.277 kb on + strand, within PfGW456L13_282at 331.277 kb on + strand, within PfGW456L13_282at 331.278 kb on - strand, within PfGW456L13_282at 331.278 kb on - strand, within PfGW456L13_282at 331.400 kb on + strand, within PfGW456L13_282at 331.401 kb on - strand, within PfGW456L13_282at 331.415 kb on + strand, within PfGW456L13_282at 331.416 kb on - strand, within PfGW456L13_282at 331.416 kb on - strand, within PfGW456L13_282at 331.571 kb on - strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.761 kb on - strand, within PfGW456L13_282at 331.773 kb on - strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.900 kb on + strandat 331.901 kb on - strandat 331.985 kb on + strandat 332.011 kb on + strandat 332.012 kb on - strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.135 kb on - strandat 332.207 kb on + strandat 332.251 kb on + strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.324 kb on - strandat 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.647 kb on + strand, within PfGW456L13_283at 332.648 kb on - strand, within PfGW456L13_283at 332.900 kb on + strand, within PfGW456L13_283at 332.900 kb on + strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.984 kb on - strand, within PfGW456L13_283at 332.984 kb on - strand, within PfGW456L13_283

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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328,796 + PfGW456L13_281 0.39 -0.2
328,796 + PfGW456L13_281 0.39 -0.6
328,797 - PfGW456L13_281 0.39 -1.3
328,797 - PfGW456L13_281 0.39 -1.5
328,797 - PfGW456L13_281 0.39 +0.7
328,797 - PfGW456L13_281 0.39 -0.3
328,797 - PfGW456L13_281 0.39 +0.9
328,800 + PfGW456L13_281 0.39 +0.7
328,928 + PfGW456L13_281 0.51 -0.1
329,096 + PfGW456L13_281 0.67 +0.7
329,105 + PfGW456L13_281 0.68 -0.2
329,105 + PfGW456L13_281 0.68 -2.0
329,105 + PfGW456L13_281 0.68 -0.2
329,105 + PfGW456L13_281 0.68 +0.8
329,105 + PfGW456L13_281 0.68 -0.0
329,106 - PfGW456L13_281 0.68 +0.5
329,106 - PfGW456L13_281 0.68 -0.7
329,106 - PfGW456L13_281 0.68 +0.2
329,106 - PfGW456L13_281 0.68 +0.7
329,106 - PfGW456L13_281 0.68 -0.8
329,106 - PfGW456L13_281 0.68 +1.0
329,330 + PfGW456L13_281 0.89 -0.2
329,331 - PfGW456L13_281 0.89 +0.6
329,331 - PfGW456L13_281 0.89 +0.4
329,416 - +0.5
329,446 + +0.7
329,457 + +0.5
329,474 + -0.4
329,556 - -1.2
329,557 + -0.6
329,557 + +0.2
329,557 + +0.5
329,557 + +1.3
329,557 + +0.6
329,558 - +0.6
329,558 - -3.1
329,655 + -1.7
329,738 + -3.4
329,738 + -0.6
329,738 + -1.1
329,739 - -1.9
329,745 - +1.2
329,749 + -0.5
329,749 + -0.3
329,750 - -1.1
329,910 + -0.4
330,150 - PfGW456L13_282 0.16 -1.7
330,164 + PfGW456L13_282 0.17 -2.2
330,164 + PfGW456L13_282 0.17 -2.1
330,164 + PfGW456L13_282 0.17 -1.2
330,164 + PfGW456L13_282 0.17 -0.2
330,164 + PfGW456L13_282 0.17 -0.2
330,164 + PfGW456L13_282 0.17 -1.3
330,164 + PfGW456L13_282 0.17 -3.1
330,165 - PfGW456L13_282 0.17 -0.6
330,183 - PfGW456L13_282 0.18 -0.2
330,209 + PfGW456L13_282 0.19 -2.1
330,209 + PfGW456L13_282 0.19 -1.9
330,209 + PfGW456L13_282 0.19 -0.1
330,210 - PfGW456L13_282 0.19 -1.9
330,210 - PfGW456L13_282 0.19 -0.3
330,210 - PfGW456L13_282 0.19 -0.9
330,213 - PfGW456L13_282 0.19 +1.9
330,350 + PfGW456L13_282 0.25 -0.3
330,350 + PfGW456L13_282 0.25 -0.5
330,350 + PfGW456L13_282 0.25 -0.6
330,350 + PfGW456L13_282 0.25 -2.2
330,350 + PfGW456L13_282 0.25 -0.1
330,350 + PfGW456L13_282 0.25 +0.2
330,351 - PfGW456L13_282 0.25 -1.9
330,351 - PfGW456L13_282 0.25 +0.1
330,351 - PfGW456L13_282 0.25 -1.4
330,351 - PfGW456L13_282 0.25 +1.7
330,351 - PfGW456L13_282 0.25 +0.6
330,380 + PfGW456L13_282 0.26 -2.1
330,416 + PfGW456L13_282 0.28 -2.2
330,417 - PfGW456L13_282 0.28 +0.3
330,417 - PfGW456L13_282 0.28 -0.7
330,417 - PfGW456L13_282 0.28 -0.9
330,449 + PfGW456L13_282 0.29 -1.4
330,449 + PfGW456L13_282 0.29 -1.2
330,449 + PfGW456L13_282 0.29 +0.3
330,450 - PfGW456L13_282 0.29 -1.1
330,489 - PfGW456L13_282 0.31 +1.2
330,503 + PfGW456L13_282 0.31 -0.7
330,503 + PfGW456L13_282 0.31 -0.1
330,503 + PfGW456L13_282 0.31 -0.3
330,504 - PfGW456L13_282 0.32 +0.8
330,506 - PfGW456L13_282 0.32 -1.4
330,738 + PfGW456L13_282 0.42 +0.6
330,738 + PfGW456L13_282 0.42 +0.6
330,738 + PfGW456L13_282 0.42 -0.7
330,739 - PfGW456L13_282 0.42 -2.4
331,004 + PfGW456L13_282 0.53 -2.1
331,005 - PfGW456L13_282 0.53 -1.9
331,005 - PfGW456L13_282 0.53 +0.5
331,005 - PfGW456L13_282 0.53 -1.5
331,137 - PfGW456L13_282 0.59 -0.3
331,211 + PfGW456L13_282 0.62 -0.8
331,211 + PfGW456L13_282 0.62 -0.5
331,212 - PfGW456L13_282 0.62 -0.3
331,212 - PfGW456L13_282 0.62 -1.7
331,212 - PfGW456L13_282 0.62 -1.5
331,277 + PfGW456L13_282 0.65 -0.3
331,277 + PfGW456L13_282 0.65 -2.0
331,277 + PfGW456L13_282 0.65 -0.7
331,278 - PfGW456L13_282 0.65 -0.3
331,278 - PfGW456L13_282 0.65 -1.8
331,400 + PfGW456L13_282 0.70 -0.4
331,401 - PfGW456L13_282 0.70 -0.9
331,415 + PfGW456L13_282 0.71 +0.5
331,416 - PfGW456L13_282 0.71 -0.9
331,416 - PfGW456L13_282 0.71 +1.2
331,571 - PfGW456L13_282 0.77 +1.9
331,628 + PfGW456L13_282 0.80 -0.1
331,628 + PfGW456L13_282 0.80 +1.5
331,628 + PfGW456L13_282 0.80 -0.1
331,628 + PfGW456L13_282 0.80 +0.1
331,628 + PfGW456L13_282 0.80 -0.5
331,628 + PfGW456L13_282 0.80 +0.0
331,628 + PfGW456L13_282 0.80 -1.4
331,628 + PfGW456L13_282 0.80 +0.4
331,628 + PfGW456L13_282 0.80 +0.2
331,629 - PfGW456L13_282 0.80 -0.3
331,629 - PfGW456L13_282 0.80 -2.0
331,629 - PfGW456L13_282 0.80 -1.7
331,629 - PfGW456L13_282 0.80 +0.1
331,629 - PfGW456L13_282 0.80 +0.6
331,629 - PfGW456L13_282 0.80 -0.3
331,629 - PfGW456L13_282 0.80 -0.7
331,629 - PfGW456L13_282 0.80 -1.0
331,629 - PfGW456L13_282 0.80 -0.9
331,629 - PfGW456L13_282 0.80 -2.5
331,629 - PfGW456L13_282 0.80 -0.3
331,629 - PfGW456L13_282 0.80 +0.1
331,629 - PfGW456L13_282 0.80 +0.1
331,629 - PfGW456L13_282 0.80 -1.1
331,629 - PfGW456L13_282 0.80 -1.5
331,761 - PfGW456L13_282 0.85 -0.0
331,773 - PfGW456L13_282 0.86 -1.1
331,865 + PfGW456L13_282 0.90 -0.8
331,865 + PfGW456L13_282 0.90 -3.1
331,865 + PfGW456L13_282 0.90 +0.1
331,865 + PfGW456L13_282 0.90 -1.4
331,865 + PfGW456L13_282 0.90 -0.4
331,865 + PfGW456L13_282 0.90 -1.3
331,866 - PfGW456L13_282 0.90 +1.3
331,866 - PfGW456L13_282 0.90 -1.8
331,866 - PfGW456L13_282 0.90 -2.1
331,866 - PfGW456L13_282 0.90 +0.5
331,866 - PfGW456L13_282 0.90 -0.3
331,866 - PfGW456L13_282 0.90 +0.1
331,866 - PfGW456L13_282 0.90 +2.1
331,900 + -0.7
331,901 - -2.0
331,985 + +0.8
332,011 + +0.5
332,012 - -0.7
332,116 + +0.0
332,116 + -0.2
332,116 + +0.3
332,116 + +0.2
332,116 + -0.5
332,116 + +1.2
332,117 - -1.0
332,117 - +0.4
332,117 - +0.5
332,117 - -0.6
332,117 - -0.4
332,117 - +0.5
332,134 + -0.7
332,134 + +0.5
332,134 + +0.9
332,134 + +0.5
332,134 + -0.1
332,135 - +1.7
332,207 + -1.1
332,251 + -0.3
332,252 - -0.2
332,252 - +0.5
332,252 - -1.0
332,252 - -0.3
332,252 - +0.7
332,324 - +0.4
332,477 + PfGW456L13_283 0.11 -0.9
332,477 + PfGW456L13_283 0.11 +0.8
332,477 + PfGW456L13_283 0.11 -1.2
332,477 + PfGW456L13_283 0.11 -2.4
332,478 - PfGW456L13_283 0.12 -0.5
332,478 - PfGW456L13_283 0.12 -1.4
332,478 - PfGW456L13_283 0.12 -0.5
332,478 - PfGW456L13_283 0.12 -0.8
332,478 - PfGW456L13_283 0.12 -0.6
332,647 + PfGW456L13_283 0.25 -1.5
332,648 - PfGW456L13_283 0.25 -0.3
332,900 + PfGW456L13_283 0.45 +0.5
332,900 + PfGW456L13_283 0.45 -0.4
332,901 - PfGW456L13_283 0.45 -2.3
332,901 - PfGW456L13_283 0.45 -2.6
332,901 - PfGW456L13_283 0.45 -0.5
332,901 - PfGW456L13_283 0.45 -1.4
332,954 + PfGW456L13_283 0.49 +0.1
332,954 + PfGW456L13_283 0.49 -1.5
332,954 + PfGW456L13_283 0.49 -0.7
332,954 + PfGW456L13_283 0.49 +0.3
332,954 + PfGW456L13_283 0.49 +1.1
332,954 + PfGW456L13_283 0.49 -1.4
332,954 + PfGW456L13_283 0.49 +0.5
332,954 + PfGW456L13_283 0.49 -2.0
332,954 + PfGW456L13_283 0.49 +0.3
332,954 + PfGW456L13_283 0.49 -1.0
332,954 + PfGW456L13_283 0.49 -1.7
332,955 - PfGW456L13_283 0.49 +0.2
332,955 - PfGW456L13_283 0.49 -0.1
332,955 - PfGW456L13_283 0.49 -0.9
332,955 - PfGW456L13_283 0.49 -0.8
332,955 - PfGW456L13_283 0.49 +0.0
332,955 - PfGW456L13_283 0.49 -0.2
332,984 - PfGW456L13_283 0.51 -1.5
332,984 - PfGW456L13_283 0.51 -1.5

Or see this region's nucleotide sequence