Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1739

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1738 and PfGW456L13_1739 overlap by 4 nucleotidesPfGW456L13_1739 and PfGW456L13_1740 are separated by 171 nucleotidesPfGW456L13_1740 and PfGW456L13_1741 are separated by 265 nucleotides PfGW456L13_1738 - Ferric iron ABC transporter, ATP-binding protein, at 1,915,798 to 1,916,907 _1738 PfGW456L13_1739 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 1,916,904 to 1,917,827 _1739 PfGW456L13_1740 - hypothetical protein, at 1,917,999 to 1,918,133 _1740 PfGW456L13_1741 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 1,918,399 to 1,920,507 _1741 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1916.111 kb on + strand, within PfGW456L13_1738at 1916.111 kb on + strand, within PfGW456L13_1738at 1916.111 kb on + strand, within PfGW456L13_1738at 1916.112 kb on - strand, within PfGW456L13_1738at 1916.186 kb on + strand, within PfGW456L13_1738at 1916.186 kb on + strand, within PfGW456L13_1738at 1916.186 kb on + strand, within PfGW456L13_1738at 1916.187 kb on - strand, within PfGW456L13_1738at 1916.187 kb on - strand, within PfGW456L13_1738at 1916.371 kb on + strand, within PfGW456L13_1738at 1916.371 kb on + strand, within PfGW456L13_1738at 1916.636 kb on + strand, within PfGW456L13_1738at 1916.636 kb on + strand, within PfGW456L13_1738at 1916.637 kb on - strand, within PfGW456L13_1738at 1916.917 kb on + strandat 1917.268 kb on + strand, within PfGW456L13_1739at 1917.269 kb on - strand, within PfGW456L13_1739at 1917.269 kb on - strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.321 kb on + strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.322 kb on - strand, within PfGW456L13_1739at 1917.323 kb on + strand, within PfGW456L13_1739at 1917.323 kb on + strand, within PfGW456L13_1739at 1917.323 kb on + strand, within PfGW456L13_1739at 1917.323 kb on + strand, within PfGW456L13_1739at 1917.323 kb on + strand, within PfGW456L13_1739at 1917.324 kb on - strand, within PfGW456L13_1739at 1917.324 kb on - strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.325 kb on + strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.326 kb on - strand, within PfGW456L13_1739at 1917.720 kb on + strand, within PfGW456L13_1739at 1917.721 kb on - strand, within PfGW456L13_1739at 1917.721 kb on - strand, within PfGW456L13_1739at 1917.721 kb on - strand, within PfGW456L13_1739at 1917.832 kb on + strandat 1917.842 kb on + strandat 1917.843 kb on - strandat 1917.843 kb on - strandat 1917.900 kb on + strandat 1917.941 kb on - strandat 1917.941 kb on - strandat 1917.943 kb on - strandat 1917.960 kb on + strandat 1917.960 kb on + strandat 1917.982 kb on - strandat 1918.000 kb on + strandat 1918.001 kb on - strandat 1918.059 kb on + strand, within PfGW456L13_1740at 1918.345 kb on + strandat 1918.346 kb on - strandat 1918.346 kb on - strandat 1918.364 kb on + strandat 1918.364 kb on + strandat 1918.365 kb on - strandat 1918.365 kb on - strandat 1918.524 kb on + strandat 1918.524 kb on + strandat 1918.525 kb on - strandat 1918.525 kb on - strandat 1918.525 kb on - strandat 1918.525 kb on - strandat 1918.525 kb on - strandat 1918.721 kb on - strand, within PfGW456L13_1741at 1918.721 kb on - strand, within PfGW456L13_1741at 1918.747 kb on + strand, within PfGW456L13_1741at 1918.748 kb on - strand, within PfGW456L13_1741at 1918.748 kb on - strand, within PfGW456L13_1741at 1918.771 kb on + strand, within PfGW456L13_1741at 1918.771 kb on + strand, within PfGW456L13_1741at 1918.771 kb on + strand, within PfGW456L13_1741at 1918.771 kb on + strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,916,111 + PfGW456L13_1738 0.28 -0.4
1,916,111 + PfGW456L13_1738 0.28 -1.0
1,916,111 + PfGW456L13_1738 0.28 +0.4
1,916,112 - PfGW456L13_1738 0.28 +0.0
1,916,186 + PfGW456L13_1738 0.35 -0.2
1,916,186 + PfGW456L13_1738 0.35 +1.2
1,916,186 + PfGW456L13_1738 0.35 -1.0
1,916,187 - PfGW456L13_1738 0.35 +1.9
1,916,187 - PfGW456L13_1738 0.35 +0.2
1,916,371 + PfGW456L13_1738 0.52 +1.3
1,916,371 + PfGW456L13_1738 0.52 +0.2
1,916,636 + PfGW456L13_1738 0.75 +0.6
1,916,636 + PfGW456L13_1738 0.75 +1.2
1,916,637 - PfGW456L13_1738 0.76 +0.9
1,916,917 + +0.4
1,917,268 + PfGW456L13_1739 0.39 -2.9
1,917,269 - PfGW456L13_1739 0.40 -1.5
1,917,269 - PfGW456L13_1739 0.40 -2.0
1,917,321 + PfGW456L13_1739 0.45 -2.1
1,917,321 + PfGW456L13_1739 0.45 -2.3
1,917,321 + PfGW456L13_1739 0.45 -1.2
1,917,321 + PfGW456L13_1739 0.45 -2.1
1,917,321 + PfGW456L13_1739 0.45 -0.9
1,917,321 + PfGW456L13_1739 0.45 -1.0
1,917,321 + PfGW456L13_1739 0.45 -0.1
1,917,321 + PfGW456L13_1739 0.45 -1.6
1,917,321 + PfGW456L13_1739 0.45 -0.6
1,917,321 + PfGW456L13_1739 0.45 -1.1
1,917,321 + PfGW456L13_1739 0.45 -2.3
1,917,321 + PfGW456L13_1739 0.45 -2.3
1,917,321 + PfGW456L13_1739 0.45 -1.1
1,917,321 + PfGW456L13_1739 0.45 -2.9
1,917,321 + PfGW456L13_1739 0.45 -2.1
1,917,321 + PfGW456L13_1739 0.45 -0.8
1,917,321 + PfGW456L13_1739 0.45 -2.7
1,917,322 - PfGW456L13_1739 0.45 -2.7
1,917,322 - PfGW456L13_1739 0.45 -3.0
1,917,322 - PfGW456L13_1739 0.45 -0.4
1,917,322 - PfGW456L13_1739 0.45 -1.4
1,917,322 - PfGW456L13_1739 0.45 -3.4
1,917,322 - PfGW456L13_1739 0.45 -2.2
1,917,322 - PfGW456L13_1739 0.45 -4.2
1,917,322 - PfGW456L13_1739 0.45 -3.8
1,917,322 - PfGW456L13_1739 0.45 -3.1
1,917,322 - PfGW456L13_1739 0.45 -2.6
1,917,322 - PfGW456L13_1739 0.45 -1.4
1,917,322 - PfGW456L13_1739 0.45 -3.5
1,917,322 - PfGW456L13_1739 0.45 -3.1
1,917,322 - PfGW456L13_1739 0.45 -0.9
1,917,322 - PfGW456L13_1739 0.45 -2.2
1,917,322 - PfGW456L13_1739 0.45 -4.1
1,917,323 + PfGW456L13_1739 0.45 -2.6
1,917,323 + PfGW456L13_1739 0.45 -2.0
1,917,323 + PfGW456L13_1739 0.45 -2.8
1,917,323 + PfGW456L13_1739 0.45 -2.0
1,917,323 + PfGW456L13_1739 0.45 -2.1
1,917,324 - PfGW456L13_1739 0.45 -2.6
1,917,324 - PfGW456L13_1739 0.45 -1.7
1,917,325 + PfGW456L13_1739 0.46 -3.2
1,917,325 + PfGW456L13_1739 0.46 -2.0
1,917,325 + PfGW456L13_1739 0.46 -1.8
1,917,325 + PfGW456L13_1739 0.46 -1.1
1,917,325 + PfGW456L13_1739 0.46 -3.4
1,917,325 + PfGW456L13_1739 0.46 -1.2
1,917,325 + PfGW456L13_1739 0.46 -2.0
1,917,325 + PfGW456L13_1739 0.46 -1.8
1,917,325 + PfGW456L13_1739 0.46 -0.1
1,917,325 + PfGW456L13_1739 0.46 -2.6
1,917,326 - PfGW456L13_1739 0.46 -1.1
1,917,326 - PfGW456L13_1739 0.46 -4.1
1,917,326 - PfGW456L13_1739 0.46 -1.5
1,917,326 - PfGW456L13_1739 0.46 -1.8
1,917,326 - PfGW456L13_1739 0.46 -2.8
1,917,326 - PfGW456L13_1739 0.46 -0.8
1,917,326 - PfGW456L13_1739 0.46 -1.2
1,917,326 - PfGW456L13_1739 0.46 -1.8
1,917,326 - PfGW456L13_1739 0.46 -0.8
1,917,326 - PfGW456L13_1739 0.46 -4.2
1,917,326 - PfGW456L13_1739 0.46 -4.2
1,917,326 - PfGW456L13_1739 0.46 -3.7
1,917,326 - PfGW456L13_1739 0.46 -2.7
1,917,326 - PfGW456L13_1739 0.46 +0.5
1,917,326 - PfGW456L13_1739 0.46 -2.0
1,917,326 - PfGW456L13_1739 0.46 -2.0
1,917,326 - PfGW456L13_1739 0.46 -0.1
1,917,326 - PfGW456L13_1739 0.46 -3.5
1,917,720 + PfGW456L13_1739 0.88 -1.3
1,917,721 - PfGW456L13_1739 0.88 -1.5
1,917,721 - PfGW456L13_1739 0.88 -1.9
1,917,721 - PfGW456L13_1739 0.88 -3.9
1,917,832 + -1.5
1,917,842 + -2.9
1,917,843 - -1.8
1,917,843 - +0.8
1,917,900 + -2.1
1,917,941 - -2.1
1,917,941 - +1.3
1,917,943 - +0.7
1,917,960 + -0.4
1,917,960 + -0.2
1,917,982 - -0.2
1,918,000 + +0.0
1,918,001 - -0.0
1,918,059 + PfGW456L13_1740 0.44 +0.5
1,918,345 + -0.0
1,918,346 - -0.0
1,918,346 - -1.4
1,918,364 + -1.5
1,918,364 + +1.1
1,918,365 - -0.7
1,918,365 - +0.9
1,918,524 + -0.7
1,918,524 + +1.2
1,918,525 - -0.8
1,918,525 - +0.6
1,918,525 - +0.1
1,918,525 - +0.7
1,918,525 - +0.1
1,918,721 - PfGW456L13_1741 0.15 -1.3
1,918,721 - PfGW456L13_1741 0.15 -0.1
1,918,747 + PfGW456L13_1741 0.17 -1.5
1,918,748 - PfGW456L13_1741 0.17 +0.7
1,918,748 - PfGW456L13_1741 0.17 -0.4
1,918,771 + PfGW456L13_1741 0.18 -2.1
1,918,771 + PfGW456L13_1741 0.18 +1.0
1,918,771 + PfGW456L13_1741 0.18 -0.3
1,918,771 + PfGW456L13_1741 0.18 +0.7
1,918,772 - PfGW456L13_1741 0.18 -1.3
1,918,772 - PfGW456L13_1741 0.18 +1.5
1,918,772 - PfGW456L13_1741 0.18 +0.8
1,918,772 - PfGW456L13_1741 0.18 +0.4
1,918,772 - PfGW456L13_1741 0.18 -1.7
1,918,772 - PfGW456L13_1741 0.18 -1.4

Or see this region's nucleotide sequence