Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1044

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1042 and PfGW456L13_1043 are separated by 1 nucleotidesPfGW456L13_1043 and PfGW456L13_1044 are separated by 149 nucleotidesPfGW456L13_1044 and PfGW456L13_1045 are separated by 223 nucleotides PfGW456L13_1042 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 1,154,465 to 1,155,367 _1042 PfGW456L13_1043 - Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-), at 1,155,369 to 1,156,088 _1043 PfGW456L13_1044 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 1,156,238 to 1,157,644 _1044 PfGW456L13_1045 - Amine oxidase [flavin-containing] (EC 1.4.3.4), at 1,157,868 to 1,159,616 _1045 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -2 -1 0 1at 1155.254 kb on + strand, within PfGW456L13_1042at 1155.254 kb on + strand, within PfGW456L13_1042at 1155.254 kb on + strand, within PfGW456L13_1042at 1155.254 kb on + strand, within PfGW456L13_1042at 1155.254 kb on + strand, within PfGW456L13_1042at 1155.255 kb on - strand, within PfGW456L13_1042at 1155.255 kb on - strand, within PfGW456L13_1042at 1155.255 kb on - strand, within PfGW456L13_1042at 1155.255 kb on - strand, within PfGW456L13_1042at 1155.365 kb on + strandat 1155.365 kb on + strandat 1155.366 kb on - strandat 1155.370 kb on + strandat 1156.012 kb on + strand, within PfGW456L13_1043at 1156.012 kb on + strand, within PfGW456L13_1043at 1156.012 kb on + strand, within PfGW456L13_1043at 1156.012 kb on + strand, within PfGW456L13_1043at 1156.012 kb on + strand, within PfGW456L13_1043at 1156.012 kb on + strand, within PfGW456L13_1043at 1156.013 kb on - strand, within PfGW456L13_1043at 1156.013 kb on - strand, within PfGW456L13_1043at 1156.013 kb on - strand, within PfGW456L13_1043at 1156.368 kb on + strandat 1156.368 kb on + strandat 1156.368 kb on + strandat 1156.369 kb on - strandat 1156.369 kb on - strandat 1156.369 kb on - strandat 1156.369 kb on - strandat 1156.369 kb on - strandat 1156.369 kb on - strandat 1156.369 kb on - strandat 1156.369 kb on - strandat 1156.384 kb on - strand, within PfGW456L13_1044at 1156.384 kb on - strand, within PfGW456L13_1044at 1156.384 kb on - strand, within PfGW456L13_1044at 1156.384 kb on - strand, within PfGW456L13_1044at 1156.384 kb on - strand, within PfGW456L13_1044at 1156.384 kb on - strand, within PfGW456L13_1044at 1156.410 kb on - strand, within PfGW456L13_1044at 1156.576 kb on + strand, within PfGW456L13_1044at 1156.577 kb on - strand, within PfGW456L13_1044at 1156.577 kb on - strand, within PfGW456L13_1044at 1156.680 kb on + strand, within PfGW456L13_1044at 1156.680 kb on + strand, within PfGW456L13_1044at 1156.680 kb on + strand, within PfGW456L13_1044at 1156.680 kb on + strand, within PfGW456L13_1044at 1156.681 kb on - strand, within PfGW456L13_1044at 1156.681 kb on - strand, within PfGW456L13_1044at 1156.681 kb on - strand, within PfGW456L13_1044at 1156.681 kb on - strand, within PfGW456L13_1044at 1156.725 kb on + strandat 1156.725 kb on + strand, within PfGW456L13_1044at 1156.725 kb on + strand, within PfGW456L13_1044at 1156.725 kb on + strand, within PfGW456L13_1044at 1156.726 kb on - strand, within PfGW456L13_1044at 1156.726 kb on - strand, within PfGW456L13_1044at 1156.726 kb on - strand, within PfGW456L13_1044at 1156.737 kb on + strand, within PfGW456L13_1044at 1156.737 kb on + strand, within PfGW456L13_1044at 1156.738 kb on - strand, within PfGW456L13_1044at 1156.738 kb on - strand, within PfGW456L13_1044at 1156.738 kb on - strand, within PfGW456L13_1044at 1156.776 kb on + strand, within PfGW456L13_1044at 1156.776 kb on + strand, within PfGW456L13_1044at 1156.935 kb on + strand, within PfGW456L13_1044at 1156.947 kb on + strand, within PfGW456L13_1044at 1156.948 kb on - strand, within PfGW456L13_1044at 1156.948 kb on - strand, within PfGW456L13_1044at 1157.091 kb on + strand, within PfGW456L13_1044at 1157.091 kb on + strand, within PfGW456L13_1044at 1157.092 kb on - strand, within PfGW456L13_1044at 1157.092 kb on - strand, within PfGW456L13_1044at 1157.139 kb on + strand, within PfGW456L13_1044at 1157.140 kb on - strand, within PfGW456L13_1044at 1157.140 kb on - strand, within PfGW456L13_1044at 1157.140 kb on - strand, within PfGW456L13_1044at 1157.140 kb on - strand, within PfGW456L13_1044at 1157.140 kb on - strand, within PfGW456L13_1044at 1157.199 kb on + strand, within PfGW456L13_1044at 1157.200 kb on - strand, within PfGW456L13_1044at 1157.200 kb on - strand, within PfGW456L13_1044at 1157.200 kb on - strand, within PfGW456L13_1044at 1157.200 kb on - strand, within PfGW456L13_1044at 1157.632 kb on + strandat 1157.700 kb on + strandat 1157.700 kb on + strandat 1157.700 kb on + strandat 1157.701 kb on - strandat 1157.701 kb on - strandat 1157.744 kb on + strandat 1157.744 kb on + strandat 1157.744 kb on + strandat 1157.745 kb on - strandat 1157.745 kb on - strandat 1157.745 kb on - strandat 1157.745 kb on - strandat 1157.745 kb on - strandat 1157.745 kb on - strandat 1157.745 kb on - strandat 1157.745 kb on - strandat 1157.751 kb on + strandat 1157.752 kb on - strandat 1157.762 kb on - strandat 1157.762 kb on - strandat 1157.794 kb on + strandat 1157.794 kb on + strandat 1157.795 kb on - strandat 1157.795 kb on - strandat 1157.795 kb on - strandat 1157.795 kb on - strandat 1157.834 kb on - strandat 1157.834 kb on - strandat 1157.834 kb on - strandat 1158.117 kb on + strand, within PfGW456L13_1045at 1158.117 kb on + strand, within PfGW456L13_1045at 1158.118 kb on - strand, within PfGW456L13_1045at 1158.118 kb on - strand, within PfGW456L13_1045at 1158.118 kb on - strand, within PfGW456L13_1045at 1158.118 kb on - strand, within PfGW456L13_1045at 1158.118 kb on - strand, within PfGW456L13_1045at 1158.118 kb on - strand, within PfGW456L13_1045at 1158.118 kb on - strandat 1158.118 kb on - strand, within PfGW456L13_1045at 1158.177 kb on + strand, within PfGW456L13_1045at 1158.177 kb on + strand, within PfGW456L13_1045at 1158.177 kb on + strand, within PfGW456L13_1045at 1158.177 kb on + strand, within PfGW456L13_1045at 1158.177 kb on + strand, within PfGW456L13_1045at 1158.178 kb on - strand, within PfGW456L13_1045at 1158.178 kb on - strand, within PfGW456L13_1045at 1158.178 kb on - strand, within PfGW456L13_1045at 1158.178 kb on - strand, within PfGW456L13_1045at 1158.178 kb on - strand, within PfGW456L13_1045at 1158.178 kb on - strand, within PfGW456L13_1045at 1158.178 kb on - strand, within PfGW456L13_1045at 1158.178 kb on - strand, within PfGW456L13_1045at 1158.196 kb on - strand, within PfGW456L13_1045at 1158.417 kb on - strand, within PfGW456L13_1045at 1158.454 kb on - strand, within PfGW456L13_1045at 1158.454 kb on - strand, within PfGW456L13_1045at 1158.572 kb on + strand, within PfGW456L13_1045at 1158.573 kb on - strand, within PfGW456L13_1045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
1,155,254 + PfGW456L13_1042 0.87 +0.1
1,155,254 + PfGW456L13_1042 0.87 +0.2
1,155,254 + PfGW456L13_1042 0.87 -0.9
1,155,254 + PfGW456L13_1042 0.87 -0.0
1,155,254 + PfGW456L13_1042 0.87 +0.8
1,155,255 - PfGW456L13_1042 0.87 -0.5
1,155,255 - PfGW456L13_1042 0.87 -0.7
1,155,255 - PfGW456L13_1042 0.87 -1.2
1,155,255 - PfGW456L13_1042 0.87 +1.1
1,155,365 + -0.1
1,155,365 + -0.7
1,155,366 - -0.7
1,155,370 + -0.2
1,156,012 + PfGW456L13_1043 0.89 +0.1
1,156,012 + PfGW456L13_1043 0.89 -0.2
1,156,012 + PfGW456L13_1043 0.89 +1.3
1,156,012 + PfGW456L13_1043 0.89 +0.4
1,156,012 + PfGW456L13_1043 0.89 -0.3
1,156,012 + PfGW456L13_1043 0.89 +0.6
1,156,013 - PfGW456L13_1043 0.89 +0.6
1,156,013 - PfGW456L13_1043 0.89 +0.1
1,156,013 - PfGW456L13_1043 0.89 -0.5
1,156,368 + -0.4
1,156,368 + -1.6
1,156,368 + -1.6
1,156,369 - -1.5
1,156,369 - -0.6
1,156,369 - -0.5
1,156,369 - -0.8
1,156,369 - -2.1
1,156,369 - -1.1
1,156,369 - -0.4
1,156,369 - -0.6
1,156,384 - PfGW456L13_1044 0.10 -1.2
1,156,384 - PfGW456L13_1044 0.10 +1.5
1,156,384 - PfGW456L13_1044 0.10 -0.8
1,156,384 - PfGW456L13_1044 0.10 -0.4
1,156,384 - PfGW456L13_1044 0.10 -1.1
1,156,384 - PfGW456L13_1044 0.10 -0.2
1,156,410 - PfGW456L13_1044 0.12 +0.6
1,156,576 + PfGW456L13_1044 0.24 -1.7
1,156,577 - PfGW456L13_1044 0.24 -1.6
1,156,577 - PfGW456L13_1044 0.24 -1.4
1,156,680 + PfGW456L13_1044 0.31 -0.2
1,156,680 + PfGW456L13_1044 0.31 -1.0
1,156,680 + PfGW456L13_1044 0.31 -0.1
1,156,680 + PfGW456L13_1044 0.31 -2.0
1,156,681 - PfGW456L13_1044 0.31 -1.3
1,156,681 - PfGW456L13_1044 0.31 -0.6
1,156,681 - PfGW456L13_1044 0.31 -1.2
1,156,681 - PfGW456L13_1044 0.31 +0.0
1,156,725 + -0.1
1,156,725 + PfGW456L13_1044 0.35 -1.3
1,156,725 + PfGW456L13_1044 0.35 -2.4
1,156,725 + PfGW456L13_1044 0.35 -0.7
1,156,726 - PfGW456L13_1044 0.35 -1.2
1,156,726 - PfGW456L13_1044 0.35 -0.6
1,156,726 - PfGW456L13_1044 0.35 -2.6
1,156,737 + PfGW456L13_1044 0.35 -1.3
1,156,737 + PfGW456L13_1044 0.35 -1.3
1,156,738 - PfGW456L13_1044 0.36 -1.5
1,156,738 - PfGW456L13_1044 0.36 -2.0
1,156,738 - PfGW456L13_1044 0.36 -1.4
1,156,776 + PfGW456L13_1044 0.38 -2.1
1,156,776 + PfGW456L13_1044 0.38 -2.0
1,156,935 + PfGW456L13_1044 0.50 -1.3
1,156,947 + PfGW456L13_1044 0.50 -1.5
1,156,948 - PfGW456L13_1044 0.50 -2.0
1,156,948 - PfGW456L13_1044 0.50 -1.7
1,157,091 + PfGW456L13_1044 0.61 -2.1
1,157,091 + PfGW456L13_1044 0.61 -0.4
1,157,092 - PfGW456L13_1044 0.61 -1.1
1,157,092 - PfGW456L13_1044 0.61 -0.9
1,157,139 + PfGW456L13_1044 0.64 -0.9
1,157,140 - PfGW456L13_1044 0.64 -0.4
1,157,140 - PfGW456L13_1044 0.64 -0.7
1,157,140 - PfGW456L13_1044 0.64 -0.9
1,157,140 - PfGW456L13_1044 0.64 +0.0
1,157,140 - PfGW456L13_1044 0.64 +0.0
1,157,199 + PfGW456L13_1044 0.68 -0.5
1,157,200 - PfGW456L13_1044 0.68 -0.7
1,157,200 - PfGW456L13_1044 0.68 -1.3
1,157,200 - PfGW456L13_1044 0.68 -0.4
1,157,200 - PfGW456L13_1044 0.68 -1.8
1,157,632 + +0.1
1,157,700 + +0.2
1,157,700 + +0.4
1,157,700 + +0.7
1,157,701 - -1.6
1,157,701 - -1.8
1,157,744 + +0.7
1,157,744 + -0.5
1,157,744 + +0.4
1,157,745 - -0.5
1,157,745 - -0.1
1,157,745 - -0.0
1,157,745 - -0.9
1,157,745 - -0.0
1,157,745 - +0.4
1,157,745 - +0.1
1,157,745 - -0.8
1,157,751 + +0.2
1,157,752 - +0.1
1,157,762 - +0.4
1,157,762 - -0.7
1,157,794 + +0.2
1,157,794 + -0.6
1,157,795 - +0.3
1,157,795 - +1.3
1,157,795 - +0.2
1,157,795 - -0.1
1,157,834 - -0.6
1,157,834 - +0.1
1,157,834 - -0.6
1,158,117 + PfGW456L13_1045 0.14 +0.3
1,158,117 + PfGW456L13_1045 0.14 -0.3
1,158,118 - PfGW456L13_1045 0.14 +0.5
1,158,118 - PfGW456L13_1045 0.14 -1.4
1,158,118 - PfGW456L13_1045 0.14 -0.4
1,158,118 - PfGW456L13_1045 0.14 -1.1
1,158,118 - PfGW456L13_1045 0.14 -0.6
1,158,118 - PfGW456L13_1045 0.14 +0.2
1,158,118 - +0.9
1,158,118 - PfGW456L13_1045 0.14 -1.5
1,158,177 + PfGW456L13_1045 0.18 -0.1
1,158,177 + PfGW456L13_1045 0.18 +1.0
1,158,177 + PfGW456L13_1045 0.18 +0.2
1,158,177 + PfGW456L13_1045 0.18 -0.4
1,158,177 + PfGW456L13_1045 0.18 +0.1
1,158,178 - PfGW456L13_1045 0.18 -1.1
1,158,178 - PfGW456L13_1045 0.18 -0.4
1,158,178 - PfGW456L13_1045 0.18 -0.0
1,158,178 - PfGW456L13_1045 0.18 +0.1
1,158,178 - PfGW456L13_1045 0.18 -2.0
1,158,178 - PfGW456L13_1045 0.18 -0.0
1,158,178 - PfGW456L13_1045 0.18 +0.1
1,158,178 - PfGW456L13_1045 0.18 -0.4
1,158,196 - PfGW456L13_1045 0.19 -1.5
1,158,417 - PfGW456L13_1045 0.31 -0.1
1,158,454 - PfGW456L13_1045 0.34 +1.2
1,158,454 - PfGW456L13_1045 0.34 +0.8
1,158,572 + PfGW456L13_1045 0.40 -1.5
1,158,573 - PfGW456L13_1045 0.40 -0.3

Or see this region's nucleotide sequence