Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1042 and PfGW456L13_1043 are separated by 1 nucleotides PfGW456L13_1043 and PfGW456L13_1044 are separated by 149 nucleotides PfGW456L13_1044 and PfGW456L13_1045 are separated by 223 nucleotides
PfGW456L13_1042 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 1,154,465 to 1,155,367
_1042
PfGW456L13_1043 - Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-), at 1,155,369 to 1,156,088
_1043
PfGW456L13_1044 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 1,156,238 to 1,157,644
_1044
PfGW456L13_1045 - Amine oxidase [flavin-containing] (EC 1.4.3.4), at 1,157,868 to 1,159,616
_1045
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1 at 1155.254 kb on + strand, within PfGW456L13_1042 at 1155.254 kb on + strand, within PfGW456L13_1042 at 1155.254 kb on + strand, within PfGW456L13_1042 at 1155.254 kb on + strand, within PfGW456L13_1042 at 1155.254 kb on + strand, within PfGW456L13_1042 at 1155.255 kb on - strand, within PfGW456L13_1042 at 1155.255 kb on - strand, within PfGW456L13_1042 at 1155.255 kb on - strand, within PfGW456L13_1042 at 1155.255 kb on - strand, within PfGW456L13_1042 at 1155.365 kb on + strand at 1155.365 kb on + strand at 1155.366 kb on - strand at 1155.370 kb on + strand at 1156.012 kb on + strand, within PfGW456L13_1043 at 1156.012 kb on + strand, within PfGW456L13_1043 at 1156.012 kb on + strand, within PfGW456L13_1043 at 1156.012 kb on + strand, within PfGW456L13_1043 at 1156.012 kb on + strand, within PfGW456L13_1043 at 1156.012 kb on + strand, within PfGW456L13_1043 at 1156.013 kb on - strand, within PfGW456L13_1043 at 1156.013 kb on - strand, within PfGW456L13_1043 at 1156.013 kb on - strand, within PfGW456L13_1043 at 1156.368 kb on + strand at 1156.368 kb on + strand at 1156.368 kb on + strand at 1156.369 kb on - strand at 1156.369 kb on - strand at 1156.369 kb on - strand at 1156.369 kb on - strand at 1156.369 kb on - strand at 1156.369 kb on - strand at 1156.369 kb on - strand at 1156.369 kb on - strand at 1156.384 kb on - strand, within PfGW456L13_1044 at 1156.384 kb on - strand, within PfGW456L13_1044 at 1156.384 kb on - strand, within PfGW456L13_1044 at 1156.384 kb on - strand, within PfGW456L13_1044 at 1156.384 kb on - strand, within PfGW456L13_1044 at 1156.384 kb on - strand, within PfGW456L13_1044 at 1156.410 kb on - strand, within PfGW456L13_1044 at 1156.576 kb on + strand, within PfGW456L13_1044 at 1156.577 kb on - strand, within PfGW456L13_1044 at 1156.577 kb on - strand, within PfGW456L13_1044 at 1156.680 kb on + strand, within PfGW456L13_1044 at 1156.680 kb on + strand, within PfGW456L13_1044 at 1156.680 kb on + strand, within PfGW456L13_1044 at 1156.680 kb on + strand, within PfGW456L13_1044 at 1156.681 kb on - strand, within PfGW456L13_1044 at 1156.681 kb on - strand, within PfGW456L13_1044 at 1156.681 kb on - strand, within PfGW456L13_1044 at 1156.681 kb on - strand, within PfGW456L13_1044 at 1156.725 kb on + strand at 1156.725 kb on + strand, within PfGW456L13_1044 at 1156.725 kb on + strand, within PfGW456L13_1044 at 1156.725 kb on + strand, within PfGW456L13_1044 at 1156.726 kb on - strand, within PfGW456L13_1044 at 1156.726 kb on - strand, within PfGW456L13_1044 at 1156.726 kb on - strand, within PfGW456L13_1044 at 1156.737 kb on + strand, within PfGW456L13_1044 at 1156.737 kb on + strand, within PfGW456L13_1044 at 1156.738 kb on - strand, within PfGW456L13_1044 at 1156.738 kb on - strand, within PfGW456L13_1044 at 1156.738 kb on - strand, within PfGW456L13_1044 at 1156.776 kb on + strand, within PfGW456L13_1044 at 1156.776 kb on + strand, within PfGW456L13_1044 at 1156.935 kb on + strand, within PfGW456L13_1044 at 1156.947 kb on + strand, within PfGW456L13_1044 at 1156.948 kb on - strand, within PfGW456L13_1044 at 1156.948 kb on - strand, within PfGW456L13_1044 at 1157.091 kb on + strand, within PfGW456L13_1044 at 1157.091 kb on + strand, within PfGW456L13_1044 at 1157.092 kb on - strand, within PfGW456L13_1044 at 1157.092 kb on - strand, within PfGW456L13_1044 at 1157.139 kb on + strand, within PfGW456L13_1044 at 1157.140 kb on - strand, within PfGW456L13_1044 at 1157.140 kb on - strand, within PfGW456L13_1044 at 1157.140 kb on - strand, within PfGW456L13_1044 at 1157.140 kb on - strand, within PfGW456L13_1044 at 1157.140 kb on - strand, within PfGW456L13_1044 at 1157.199 kb on + strand, within PfGW456L13_1044 at 1157.200 kb on - strand, within PfGW456L13_1044 at 1157.200 kb on - strand, within PfGW456L13_1044 at 1157.200 kb on - strand, within PfGW456L13_1044 at 1157.200 kb on - strand, within PfGW456L13_1044 at 1157.632 kb on + strand at 1157.700 kb on + strand at 1157.700 kb on + strand at 1157.700 kb on + strand at 1157.701 kb on - strand at 1157.701 kb on - strand at 1157.744 kb on + strand at 1157.744 kb on + strand at 1157.744 kb on + strand at 1157.745 kb on - strand at 1157.745 kb on - strand at 1157.745 kb on - strand at 1157.745 kb on - strand at 1157.745 kb on - strand at 1157.745 kb on - strand at 1157.745 kb on - strand at 1157.745 kb on - strand at 1157.751 kb on + strand at 1157.752 kb on - strand at 1157.762 kb on - strand at 1157.762 kb on - strand at 1157.794 kb on + strand at 1157.794 kb on + strand at 1157.795 kb on - strand at 1157.795 kb on - strand at 1157.795 kb on - strand at 1157.795 kb on - strand at 1157.834 kb on - strand at 1157.834 kb on - strand at 1157.834 kb on - strand at 1158.117 kb on + strand, within PfGW456L13_1045 at 1158.117 kb on + strand, within PfGW456L13_1045 at 1158.118 kb on - strand, within PfGW456L13_1045 at 1158.118 kb on - strand, within PfGW456L13_1045 at 1158.118 kb on - strand, within PfGW456L13_1045 at 1158.118 kb on - strand, within PfGW456L13_1045 at 1158.118 kb on - strand, within PfGW456L13_1045 at 1158.118 kb on - strand, within PfGW456L13_1045 at 1158.118 kb on - strand at 1158.118 kb on - strand, within PfGW456L13_1045 at 1158.177 kb on + strand, within PfGW456L13_1045 at 1158.177 kb on + strand, within PfGW456L13_1045 at 1158.177 kb on + strand, within PfGW456L13_1045 at 1158.177 kb on + strand, within PfGW456L13_1045 at 1158.177 kb on + strand, within PfGW456L13_1045 at 1158.178 kb on - strand, within PfGW456L13_1045 at 1158.178 kb on - strand, within PfGW456L13_1045 at 1158.178 kb on - strand, within PfGW456L13_1045 at 1158.178 kb on - strand, within PfGW456L13_1045 at 1158.178 kb on - strand, within PfGW456L13_1045 at 1158.178 kb on - strand, within PfGW456L13_1045 at 1158.178 kb on - strand, within PfGW456L13_1045 at 1158.178 kb on - strand, within PfGW456L13_1045 at 1158.196 kb on - strand, within PfGW456L13_1045 at 1158.417 kb on - strand, within PfGW456L13_1045 at 1158.454 kb on - strand, within PfGW456L13_1045 at 1158.454 kb on - strand, within PfGW456L13_1045 at 1158.572 kb on + strand, within PfGW456L13_1045 at 1158.573 kb on - strand, within PfGW456L13_1045
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 1,155,254 + PfGW456L13_1042 0.87 +0.1 1,155,254 + PfGW456L13_1042 0.87 +0.2 1,155,254 + PfGW456L13_1042 0.87 -0.9 1,155,254 + PfGW456L13_1042 0.87 -0.0 1,155,254 + PfGW456L13_1042 0.87 +0.8 1,155,255 - PfGW456L13_1042 0.87 -0.5 1,155,255 - PfGW456L13_1042 0.87 -0.7 1,155,255 - PfGW456L13_1042 0.87 -1.2 1,155,255 - PfGW456L13_1042 0.87 +1.1 1,155,365 + -0.1 1,155,365 + -0.7 1,155,366 - -0.7 1,155,370 + -0.2 1,156,012 + PfGW456L13_1043 0.89 +0.1 1,156,012 + PfGW456L13_1043 0.89 -0.2 1,156,012 + PfGW456L13_1043 0.89 +1.3 1,156,012 + PfGW456L13_1043 0.89 +0.4 1,156,012 + PfGW456L13_1043 0.89 -0.3 1,156,012 + PfGW456L13_1043 0.89 +0.6 1,156,013 - PfGW456L13_1043 0.89 +0.6 1,156,013 - PfGW456L13_1043 0.89 +0.1 1,156,013 - PfGW456L13_1043 0.89 -0.5 1,156,368 + -0.4 1,156,368 + -1.6 1,156,368 + -1.6 1,156,369 - -1.5 1,156,369 - -0.6 1,156,369 - -0.5 1,156,369 - -0.8 1,156,369 - -2.1 1,156,369 - -1.1 1,156,369 - -0.4 1,156,369 - -0.6 1,156,384 - PfGW456L13_1044 0.10 -1.2 1,156,384 - PfGW456L13_1044 0.10 +1.5 1,156,384 - PfGW456L13_1044 0.10 -0.8 1,156,384 - PfGW456L13_1044 0.10 -0.4 1,156,384 - PfGW456L13_1044 0.10 -1.1 1,156,384 - PfGW456L13_1044 0.10 -0.2 1,156,410 - PfGW456L13_1044 0.12 +0.6 1,156,576 + PfGW456L13_1044 0.24 -1.7 1,156,577 - PfGW456L13_1044 0.24 -1.6 1,156,577 - PfGW456L13_1044 0.24 -1.4 1,156,680 + PfGW456L13_1044 0.31 -0.2 1,156,680 + PfGW456L13_1044 0.31 -1.0 1,156,680 + PfGW456L13_1044 0.31 -0.1 1,156,680 + PfGW456L13_1044 0.31 -2.0 1,156,681 - PfGW456L13_1044 0.31 -1.3 1,156,681 - PfGW456L13_1044 0.31 -0.6 1,156,681 - PfGW456L13_1044 0.31 -1.2 1,156,681 - PfGW456L13_1044 0.31 +0.0 1,156,725 + -0.1 1,156,725 + PfGW456L13_1044 0.35 -1.3 1,156,725 + PfGW456L13_1044 0.35 -2.4 1,156,725 + PfGW456L13_1044 0.35 -0.7 1,156,726 - PfGW456L13_1044 0.35 -1.2 1,156,726 - PfGW456L13_1044 0.35 -0.6 1,156,726 - PfGW456L13_1044 0.35 -2.6 1,156,737 + PfGW456L13_1044 0.35 -1.3 1,156,737 + PfGW456L13_1044 0.35 -1.3 1,156,738 - PfGW456L13_1044 0.36 -1.5 1,156,738 - PfGW456L13_1044 0.36 -2.0 1,156,738 - PfGW456L13_1044 0.36 -1.4 1,156,776 + PfGW456L13_1044 0.38 -2.1 1,156,776 + PfGW456L13_1044 0.38 -2.0 1,156,935 + PfGW456L13_1044 0.50 -1.3 1,156,947 + PfGW456L13_1044 0.50 -1.5 1,156,948 - PfGW456L13_1044 0.50 -2.0 1,156,948 - PfGW456L13_1044 0.50 -1.7 1,157,091 + PfGW456L13_1044 0.61 -2.1 1,157,091 + PfGW456L13_1044 0.61 -0.4 1,157,092 - PfGW456L13_1044 0.61 -1.1 1,157,092 - PfGW456L13_1044 0.61 -0.9 1,157,139 + PfGW456L13_1044 0.64 -0.9 1,157,140 - PfGW456L13_1044 0.64 -0.4 1,157,140 - PfGW456L13_1044 0.64 -0.7 1,157,140 - PfGW456L13_1044 0.64 -0.9 1,157,140 - PfGW456L13_1044 0.64 +0.0 1,157,140 - PfGW456L13_1044 0.64 +0.0 1,157,199 + PfGW456L13_1044 0.68 -0.5 1,157,200 - PfGW456L13_1044 0.68 -0.7 1,157,200 - PfGW456L13_1044 0.68 -1.3 1,157,200 - PfGW456L13_1044 0.68 -0.4 1,157,200 - PfGW456L13_1044 0.68 -1.8 1,157,632 + +0.1 1,157,700 + +0.2 1,157,700 + +0.4 1,157,700 + +0.7 1,157,701 - -1.6 1,157,701 - -1.8 1,157,744 + +0.7 1,157,744 + -0.5 1,157,744 + +0.4 1,157,745 - -0.5 1,157,745 - -0.1 1,157,745 - -0.0 1,157,745 - -0.9 1,157,745 - -0.0 1,157,745 - +0.4 1,157,745 - +0.1 1,157,745 - -0.8 1,157,751 + +0.2 1,157,752 - +0.1 1,157,762 - +0.4 1,157,762 - -0.7 1,157,794 + +0.2 1,157,794 + -0.6 1,157,795 - +0.3 1,157,795 - +1.3 1,157,795 - +0.2 1,157,795 - -0.1 1,157,834 - -0.6 1,157,834 - +0.1 1,157,834 - -0.6 1,158,117 + PfGW456L13_1045 0.14 +0.3 1,158,117 + PfGW456L13_1045 0.14 -0.3 1,158,118 - PfGW456L13_1045 0.14 +0.5 1,158,118 - PfGW456L13_1045 0.14 -1.4 1,158,118 - PfGW456L13_1045 0.14 -0.4 1,158,118 - PfGW456L13_1045 0.14 -1.1 1,158,118 - PfGW456L13_1045 0.14 -0.6 1,158,118 - PfGW456L13_1045 0.14 +0.2 1,158,118 - +0.9 1,158,118 - PfGW456L13_1045 0.14 -1.5 1,158,177 + PfGW456L13_1045 0.18 -0.1 1,158,177 + PfGW456L13_1045 0.18 +1.0 1,158,177 + PfGW456L13_1045 0.18 +0.2 1,158,177 + PfGW456L13_1045 0.18 -0.4 1,158,177 + PfGW456L13_1045 0.18 +0.1 1,158,178 - PfGW456L13_1045 0.18 -1.1 1,158,178 - PfGW456L13_1045 0.18 -0.4 1,158,178 - PfGW456L13_1045 0.18 -0.0 1,158,178 - PfGW456L13_1045 0.18 +0.1 1,158,178 - PfGW456L13_1045 0.18 -2.0 1,158,178 - PfGW456L13_1045 0.18 -0.0 1,158,178 - PfGW456L13_1045 0.18 +0.1 1,158,178 - PfGW456L13_1045 0.18 -0.4 1,158,196 - PfGW456L13_1045 0.19 -1.5 1,158,417 - PfGW456L13_1045 0.31 -0.1 1,158,454 - PfGW456L13_1045 0.34 +1.2 1,158,454 - PfGW456L13_1045 0.34 +0.8 1,158,572 + PfGW456L13_1045 0.40 -1.5 1,158,573 - PfGW456L13_1045 0.40 -0.3
Or see this region's nucleotide sequence