Strain Fitness in Pseudomonas sp. RS175 around PFR28_04491

Experiment: L-Valine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04490 and PFR28_04491 are separated by 470 nucleotidesPFR28_04491 and PFR28_04492 are separated by 57 nucleotides PFR28_04490: PFR28_04490 - Proline/betaine transporter, at 5,117,553 to 5,118,851 _04490 PFR28_04491: PFR28_04491 - putative acyl-CoA thioester hydrolase, at 5,119,322 to 5,119,726 _04491 PFR28_04492: PFR28_04492 - Putative glucose-6-phosphate 1-epimerase, at 5,119,784 to 5,120,683 _04492 Position (kb) 5119 5120Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5118.455 kb on + strand, within PFR28_04490at 5118.455 kb on + strand, within PFR28_04490at 5118.455 kb on + strand, within PFR28_04490at 5118.455 kb on + strand, within PFR28_04490at 5118.456 kb on - strand, within PFR28_04490at 5118.496 kb on + strand, within PFR28_04490at 5118.496 kb on + strand, within PFR28_04490at 5118.496 kb on + strand, within PFR28_04490at 5118.496 kb on + strand, within PFR28_04490at 5118.496 kb on + strand, within PFR28_04490at 5118.496 kb on + strand, within PFR28_04490at 5118.497 kb on - strand, within PFR28_04490at 5118.497 kb on - strand, within PFR28_04490at 5118.497 kb on - strand, within PFR28_04490at 5118.497 kb on - strand, within PFR28_04490at 5118.739 kb on + strandat 5118.740 kb on - strandat 5118.740 kb on - strandat 5118.784 kb on + strandat 5118.785 kb on - strandat 5118.785 kb on - strandat 5118.785 kb on - strandat 5118.867 kb on + strandat 5118.867 kb on + strandat 5118.867 kb on + strandat 5118.867 kb on + strandat 5118.867 kb on + strandat 5118.867 kb on + strandat 5118.868 kb on - strandat 5118.868 kb on - strandat 5118.869 kb on + strandat 5118.869 kb on + strandat 5118.870 kb on - strandat 5118.870 kb on - strandat 5118.870 kb on - strandat 5119.058 kb on + strandat 5119.059 kb on - strandat 5119.077 kb on + strandat 5119.077 kb on + strandat 5119.078 kb on - strandat 5119.106 kb on + strandat 5119.108 kb on + strandat 5119.108 kb on + strandat 5119.108 kb on + strandat 5119.109 kb on - strandat 5119.109 kb on - strandat 5119.109 kb on - strandat 5119.132 kb on + strandat 5119.196 kb on + strandat 5119.196 kb on + strandat 5119.197 kb on - strandat 5119.261 kb on + strandat 5119.273 kb on + strandat 5119.286 kb on + strandat 5119.286 kb on + strandat 5119.286 kb on + strandat 5119.287 kb on - strandat 5119.287 kb on - strandat 5119.287 kb on - strandat 5119.287 kb on - strandat 5119.299 kb on + strandat 5119.326 kb on + strandat 5119.326 kb on + strandat 5119.326 kb on + strandat 5119.327 kb on - strandat 5119.327 kb on - strandat 5119.327 kb on - strandat 5119.559 kb on + strand, within PFR28_04491at 5119.559 kb on + strand, within PFR28_04491at 5119.559 kb on + strand, within PFR28_04491at 5119.559 kb on + strand, within PFR28_04491at 5119.559 kb on + strand, within PFR28_04491at 5119.560 kb on - strand, within PFR28_04491at 5119.789 kb on + strandat 5119.789 kb on + strandat 5119.790 kb on - strandat 5119.886 kb on - strand, within PFR28_04492at 5119.895 kb on + strand, within PFR28_04492at 5119.895 kb on + strand, within PFR28_04492at 5119.895 kb on + strand, within PFR28_04492at 5119.896 kb on - strand, within PFR28_04492at 5119.896 kb on - strand, within PFR28_04492at 5119.896 kb on - strand, within PFR28_04492at 5120.028 kb on + strand, within PFR28_04492at 5120.028 kb on + strand, within PFR28_04492at 5120.028 kb on + strand, within PFR28_04492at 5120.028 kb on + strand, within PFR28_04492at 5120.028 kb on + strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.029 kb on - strand, within PFR28_04492at 5120.073 kb on + strand, within PFR28_04492at 5120.073 kb on + strand, within PFR28_04492at 5120.073 kb on + strand, within PFR28_04492at 5120.074 kb on - strand, within PFR28_04492at 5120.151 kb on - strand, within PFR28_04492at 5120.246 kb on - strand, within PFR28_04492at 5120.284 kb on - strand, within PFR28_04492at 5120.291 kb on + strand, within PFR28_04492at 5120.291 kb on + strand, within PFR28_04492at 5120.292 kb on - strand, within PFR28_04492at 5120.292 kb on - strand, within PFR28_04492at 5120.292 kb on - strand, within PFR28_04492at 5120.292 kb on - strand, within PFR28_04492at 5120.292 kb on - strand, within PFR28_04492at 5120.348 kb on + strand, within PFR28_04492at 5120.348 kb on + strand, within PFR28_04492at 5120.348 kb on + strand, within PFR28_04492at 5120.348 kb on + strand, within PFR28_04492at 5120.348 kb on + strand, within PFR28_04492at 5120.348 kb on + strand, within PFR28_04492at 5120.349 kb on - strand, within PFR28_04492at 5120.349 kb on - strand, within PFR28_04492at 5120.349 kb on - strand, within PFR28_04492at 5120.426 kb on + strand, within PFR28_04492at 5120.426 kb on + strand, within PFR28_04492at 5120.426 kb on + strand, within PFR28_04492at 5120.426 kb on + strand, within PFR28_04492at 5120.427 kb on - strand, within PFR28_04492at 5120.427 kb on - strand, within PFR28_04492at 5120.427 kb on - strand, within PFR28_04492at 5120.427 kb on - strand, within PFR28_04492at 5120.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C) 10 mM
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5,118,455 + PFR28_04490 0.69 -0.3
5,118,455 + PFR28_04490 0.69 +1.0
5,118,455 + PFR28_04490 0.69 +0.2
5,118,455 + PFR28_04490 0.69 +1.3
5,118,456 - PFR28_04490 0.70 -0.5
5,118,496 + PFR28_04490 0.73 -0.4
5,118,496 + PFR28_04490 0.73 +0.3
5,118,496 + PFR28_04490 0.73 +0.7
5,118,496 + PFR28_04490 0.73 +0.2
5,118,496 + PFR28_04490 0.73 -0.3
5,118,496 + PFR28_04490 0.73 -0.0
5,118,497 - PFR28_04490 0.73 -1.1
5,118,497 - PFR28_04490 0.73 -0.0
5,118,497 - PFR28_04490 0.73 +0.2
5,118,497 - PFR28_04490 0.73 -1.1
5,118,739 + +1.1
5,118,740 - +0.2
5,118,740 - -0.2
5,118,784 + +0.7
5,118,785 - +0.3
5,118,785 - +0.4
5,118,785 - -0.5
5,118,867 + -1.8
5,118,867 + +0.4
5,118,867 + +1.8
5,118,867 + +1.0
5,118,867 + +0.3
5,118,867 + +0.5
5,118,868 - +0.7
5,118,868 - +0.1
5,118,869 + +1.5
5,118,869 + +0.4
5,118,870 - +0.6
5,118,870 - -0.8
5,118,870 - -0.4
5,119,058 + +0.8
5,119,059 - -0.6
5,119,077 + +1.7
5,119,077 + +0.2
5,119,078 - -0.1
5,119,106 + +0.3
5,119,108 + +0.5
5,119,108 + +1.3
5,119,108 + +2.0
5,119,109 - -0.2
5,119,109 - -1.6
5,119,109 - -1.1
5,119,132 + +0.9
5,119,196 + +2.1
5,119,196 + -0.1
5,119,197 - -1.1
5,119,261 + -0.1
5,119,273 + +0.5
5,119,286 + -1.5
5,119,286 + -1.4
5,119,286 + -0.8
5,119,287 - -2.0
5,119,287 - -0.9
5,119,287 - -3.6
5,119,287 - -2.5
5,119,299 + +0.7
5,119,326 + -3.1
5,119,326 + -3.4
5,119,326 + -4.1
5,119,327 - -2.4
5,119,327 - -1.6
5,119,327 - -3.2
5,119,559 + PFR28_04491 0.59 -3.5
5,119,559 + PFR28_04491 0.59 -2.5
5,119,559 + PFR28_04491 0.59 -3.0
5,119,559 + PFR28_04491 0.59 -3.3
5,119,559 + PFR28_04491 0.59 -1.8
5,119,560 - PFR28_04491 0.59 -2.5
5,119,789 + +0.1
5,119,789 + +0.1
5,119,790 - -3.0
5,119,886 - PFR28_04492 0.11 -0.1
5,119,895 + PFR28_04492 0.12 +0.1
5,119,895 + PFR28_04492 0.12 +0.3
5,119,895 + PFR28_04492 0.12 -1.3
5,119,896 - PFR28_04492 0.12 -1.1
5,119,896 - PFR28_04492 0.12 -0.3
5,119,896 - PFR28_04492 0.12 +0.0
5,120,028 + PFR28_04492 0.27 +0.6
5,120,028 + PFR28_04492 0.27 +0.0
5,120,028 + PFR28_04492 0.27 +0.5
5,120,028 + PFR28_04492 0.27 -1.8
5,120,028 + PFR28_04492 0.27 +1.4
5,120,029 - PFR28_04492 0.27 -1.1
5,120,029 - PFR28_04492 0.27 -0.7
5,120,029 - PFR28_04492 0.27 +0.7
5,120,029 - PFR28_04492 0.27 -0.6
5,120,029 - PFR28_04492 0.27 -1.1
5,120,029 - PFR28_04492 0.27 -1.1
5,120,029 - PFR28_04492 0.27 -0.3
5,120,029 - PFR28_04492 0.27 -0.4
5,120,029 - PFR28_04492 0.27 +0.0
5,120,029 - PFR28_04492 0.27 -0.2
5,120,029 - PFR28_04492 0.27 +1.2
5,120,073 + PFR28_04492 0.32 -0.6
5,120,073 + PFR28_04492 0.32 -0.8
5,120,073 + PFR28_04492 0.32 +1.3
5,120,074 - PFR28_04492 0.32 -1.4
5,120,151 - PFR28_04492 0.41 +0.0
5,120,246 - PFR28_04492 0.51 -0.9
5,120,284 - PFR28_04492 0.56 +0.4
5,120,291 + PFR28_04492 0.56 +0.1
5,120,291 + PFR28_04492 0.56 -0.3
5,120,292 - PFR28_04492 0.56 +0.1
5,120,292 - PFR28_04492 0.56 +0.9
5,120,292 - PFR28_04492 0.56 -0.7
5,120,292 - PFR28_04492 0.56 +0.7
5,120,292 - PFR28_04492 0.56 -0.6
5,120,348 + PFR28_04492 0.63 +0.5
5,120,348 + PFR28_04492 0.63 -2.3
5,120,348 + PFR28_04492 0.63 -2.3
5,120,348 + PFR28_04492 0.63 +0.5
5,120,348 + PFR28_04492 0.63 +1.0
5,120,348 + PFR28_04492 0.63 -0.1
5,120,349 - PFR28_04492 0.63 -0.3
5,120,349 - PFR28_04492 0.63 -0.7
5,120,349 - PFR28_04492 0.63 +0.3
5,120,426 + PFR28_04492 0.71 -0.1
5,120,426 + PFR28_04492 0.71 +0.9
5,120,426 + PFR28_04492 0.71 -0.2
5,120,426 + PFR28_04492 0.71 +0.5
5,120,427 - PFR28_04492 0.71 -1.0
5,120,427 - PFR28_04492 0.71 -0.5
5,120,427 - PFR28_04492 0.71 -0.9
5,120,427 - PFR28_04492 0.71 -0.8
5,120,647 + +0.3

Or see this region's nucleotide sequence