Strain Fitness in Pseudomonas sp. RS175 around PFR28_00710

Experiment: L-Valine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00708 and PFR28_00709 are separated by 98 nucleotidesPFR28_00709 and PFR28_00710 are separated by 3 nucleotidesPFR28_00710 and PFR28_00711 are separated by 158 nucleotides PFR28_00708: PFR28_00708 - Nodulation protein D 2, at 748,830 to 749,762 _00708 PFR28_00709: PFR28_00709 - hypothetical protein, at 749,861 to 750,226 _00709 PFR28_00710: PFR28_00710 - HTH-type transcriptional regulator YidZ, at 750,230 to 751,345 _00710 PFR28_00711: PFR28_00711 - Phosphoethanolamine transferase EptA, at 751,504 to 753,153 _00711 Position (kb) 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 749.241 kb on + strand, within PFR28_00708at 749.276 kb on + strand, within PFR28_00708at 749.401 kb on - strand, within PFR28_00708at 749.401 kb on - strand, within PFR28_00708at 749.401 kb on - strand, within PFR28_00708at 749.401 kb on - strand, within PFR28_00708at 749.514 kb on + strand, within PFR28_00708at 749.514 kb on + strand, within PFR28_00708at 749.514 kb on + strand, within PFR28_00708at 749.514 kb on + strand, within PFR28_00708at 749.514 kb on + strand, within PFR28_00708at 749.515 kb on - strand, within PFR28_00708at 749.515 kb on - strand, within PFR28_00708at 749.515 kb on - strand, within PFR28_00708at 749.571 kb on + strand, within PFR28_00708at 749.571 kb on + strand, within PFR28_00708at 749.571 kb on + strand, within PFR28_00708at 749.571 kb on + strand, within PFR28_00708at 749.571 kb on + strand, within PFR28_00708at 749.571 kb on + strand, within PFR28_00708at 749.572 kb on - strand, within PFR28_00708at 749.572 kb on - strand, within PFR28_00708at 749.572 kb on - strand, within PFR28_00708at 749.572 kb on - strand, within PFR28_00708at 749.572 kb on - strand, within PFR28_00708at 749.573 kb on + strand, within PFR28_00708at 749.573 kb on + strand, within PFR28_00708at 749.606 kb on - strand, within PFR28_00708at 749.606 kb on - strand, within PFR28_00708at 749.807 kb on + strandat 749.807 kb on + strandat 749.882 kb on + strandat 749.882 kb on + strandat 749.883 kb on - strandat 749.883 kb on - strandat 749.883 kb on - strandat 749.935 kb on + strand, within PFR28_00709at 749.935 kb on + strand, within PFR28_00709at 749.936 kb on - strand, within PFR28_00709at 750.200 kb on + strandat 750.200 kb on + strandat 750.200 kb on + strandat 750.456 kb on + strand, within PFR28_00710at 750.456 kb on + strand, within PFR28_00710at 750.456 kb on + strand, within PFR28_00710at 750.456 kb on + strand, within PFR28_00710at 750.456 kb on + strand, within PFR28_00710at 750.456 kb on + strand, within PFR28_00710at 750.456 kb on + strand, within PFR28_00710at 750.456 kb on + strand, within PFR28_00710at 750.457 kb on - strand, within PFR28_00710at 750.457 kb on - strand, within PFR28_00710at 750.457 kb on - strand, within PFR28_00710at 750.460 kb on + strand, within PFR28_00710at 750.461 kb on - strand, within PFR28_00710at 750.461 kb on - strand, within PFR28_00710at 750.461 kb on - strand, within PFR28_00710at 750.566 kb on + strand, within PFR28_00710at 750.567 kb on - strand, within PFR28_00710at 750.614 kb on - strand, within PFR28_00710at 750.790 kb on - strand, within PFR28_00710at 750.834 kb on + strand, within PFR28_00710at 750.834 kb on + strand, within PFR28_00710at 750.835 kb on - strand, within PFR28_00710at 750.942 kb on + strand, within PFR28_00710at 750.942 kb on + strand, within PFR28_00710at 750.942 kb on + strand, within PFR28_00710at 750.942 kb on + strand, within PFR28_00710at 750.942 kb on + strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.943 kb on - strand, within PFR28_00710at 750.958 kb on + strand, within PFR28_00710at 750.958 kb on + strand, within PFR28_00710at 750.958 kb on + strand, within PFR28_00710at 750.958 kb on + strand, within PFR28_00710at 750.959 kb on - strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.960 kb on + strand, within PFR28_00710at 750.961 kb on - strand, within PFR28_00710at 750.961 kb on - strand, within PFR28_00710at 750.961 kb on - strand, within PFR28_00710at 751.035 kb on + strand, within PFR28_00710at 751.036 kb on - strand, within PFR28_00710at 751.036 kb on - strand, within PFR28_00710at 751.036 kb on - strand, within PFR28_00710at 751.036 kb on - strand, within PFR28_00710at 751.098 kb on + strand, within PFR28_00710at 751.108 kb on + strand, within PFR28_00710at 751.129 kb on + strand, within PFR28_00710at 751.150 kb on + strand, within PFR28_00710at 751.150 kb on + strand, within PFR28_00710at 751.150 kb on + strand, within PFR28_00710at 751.150 kb on + strand, within PFR28_00710at 751.150 kb on + strand, within PFR28_00710at 751.151 kb on - strand, within PFR28_00710at 751.151 kb on - strand, within PFR28_00710at 751.151 kb on - strand, within PFR28_00710at 751.283 kb on + strandat 751.283 kb on + strandat 751.283 kb on + strandat 751.283 kb on + strandat 751.283 kb on + strandat 751.284 kb on - strandat 751.284 kb on - strandat 751.284 kb on - strandat 751.284 kb on - strandat 751.284 kb on - strandat 751.284 kb on - strandat 751.288 kb on + strandat 751.289 kb on - strandat 751.373 kb on + strandat 751.512 kb on + strandat 751.562 kb on + strandat 751.587 kb on - strandat 751.587 kb on - strandat 751.727 kb on + strand, within PFR28_00711at 751.727 kb on + strand, within PFR28_00711at 751.760 kb on - strand, within PFR28_00711at 751.844 kb on + strand, within PFR28_00711at 751.872 kb on - strand, within PFR28_00711at 751.872 kb on - strand, within PFR28_00711at 751.886 kb on + strand, within PFR28_00711at 751.949 kb on + strand, within PFR28_00711at 751.968 kb on + strand, within PFR28_00711at 752.011 kb on + strand, within PFR28_00711at 752.012 kb on - strand, within PFR28_00711at 752.077 kb on + strand, within PFR28_00711at 752.078 kb on - strand, within PFR28_00711at 752.078 kb on - strand, within PFR28_00711at 752.078 kb on - strand, within PFR28_00711at 752.204 kb on + strand, within PFR28_00711at 752.205 kb on - strand, within PFR28_00711at 752.213 kb on + strand, within PFR28_00711at 752.256 kb on + strand, within PFR28_00711

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C) 10 mM
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749,241 + PFR28_00708 0.44 -1.8
749,276 + PFR28_00708 0.48 -0.2
749,401 - PFR28_00708 0.61 -1.5
749,401 - PFR28_00708 0.61 +1.4
749,401 - PFR28_00708 0.61 -1.4
749,401 - PFR28_00708 0.61 +0.1
749,514 + PFR28_00708 0.73 -0.6
749,514 + PFR28_00708 0.73 -0.2
749,514 + PFR28_00708 0.73 -0.6
749,514 + PFR28_00708 0.73 -0.3
749,514 + PFR28_00708 0.73 -0.7
749,515 - PFR28_00708 0.73 -0.5
749,515 - PFR28_00708 0.73 +0.3
749,515 - PFR28_00708 0.73 +0.3
749,571 + PFR28_00708 0.79 -0.0
749,571 + PFR28_00708 0.79 -0.3
749,571 + PFR28_00708 0.79 -0.6
749,571 + PFR28_00708 0.79 -0.3
749,571 + PFR28_00708 0.79 -0.2
749,571 + PFR28_00708 0.79 -0.2
749,572 - PFR28_00708 0.80 +0.4
749,572 - PFR28_00708 0.80 -0.6
749,572 - PFR28_00708 0.80 -0.4
749,572 - PFR28_00708 0.80 +0.9
749,572 - PFR28_00708 0.80 +0.4
749,573 + PFR28_00708 0.80 +1.4
749,573 + PFR28_00708 0.80 -0.1
749,606 - PFR28_00708 0.83 -0.1
749,606 - PFR28_00708 0.83 +1.2
749,807 + -0.4
749,807 + -0.8
749,882 + -0.9
749,882 + -1.0
749,883 - +0.3
749,883 - +1.4
749,883 - -0.7
749,935 + PFR28_00709 0.20 -1.7
749,935 + PFR28_00709 0.20 -0.9
749,936 - PFR28_00709 0.20 +1.1
750,200 + +0.6
750,200 + +0.1
750,200 + -0.2
750,456 + PFR28_00710 0.20 +0.1
750,456 + PFR28_00710 0.20 -0.9
750,456 + PFR28_00710 0.20 -0.0
750,456 + PFR28_00710 0.20 -0.3
750,456 + PFR28_00710 0.20 +0.8
750,456 + PFR28_00710 0.20 -0.1
750,456 + PFR28_00710 0.20 -0.4
750,456 + PFR28_00710 0.20 -1.9
750,457 - PFR28_00710 0.20 -0.4
750,457 - PFR28_00710 0.20 -0.8
750,457 - PFR28_00710 0.20 -0.2
750,460 + PFR28_00710 0.21 +0.2
750,461 - PFR28_00710 0.21 +0.7
750,461 - PFR28_00710 0.21 +0.2
750,461 - PFR28_00710 0.21 +0.0
750,566 + PFR28_00710 0.30 -0.5
750,567 - PFR28_00710 0.30 -0.1
750,614 - PFR28_00710 0.34 -0.2
750,790 - PFR28_00710 0.50 -0.4
750,834 + PFR28_00710 0.54 -0.3
750,834 + PFR28_00710 0.54 -0.6
750,835 - PFR28_00710 0.54 +0.4
750,942 + PFR28_00710 0.64 -0.5
750,942 + PFR28_00710 0.64 +0.3
750,942 + PFR28_00710 0.64 -1.0
750,942 + PFR28_00710 0.64 -1.2
750,942 + PFR28_00710 0.64 +1.3
750,943 - PFR28_00710 0.64 +0.0
750,943 - PFR28_00710 0.64 -0.1
750,943 - PFR28_00710 0.64 +0.4
750,943 - PFR28_00710 0.64 -0.1
750,943 - PFR28_00710 0.64 +0.5
750,943 - PFR28_00710 0.64 +0.3
750,943 - PFR28_00710 0.64 +0.6
750,943 - PFR28_00710 0.64 -0.2
750,943 - PFR28_00710 0.64 -1.0
750,943 - PFR28_00710 0.64 +0.9
750,943 - PFR28_00710 0.64 -0.6
750,958 + PFR28_00710 0.65 -0.3
750,958 + PFR28_00710 0.65 -0.6
750,958 + PFR28_00710 0.65 -0.1
750,958 + PFR28_00710 0.65 -0.7
750,959 - PFR28_00710 0.65 -0.3
750,960 + PFR28_00710 0.65 +1.0
750,960 + PFR28_00710 0.65 +0.9
750,960 + PFR28_00710 0.65 +0.1
750,960 + PFR28_00710 0.65 -1.4
750,960 + PFR28_00710 0.65 +0.8
750,960 + PFR28_00710 0.65 +0.6
750,960 + PFR28_00710 0.65 +0.5
750,960 + PFR28_00710 0.65 -1.3
750,960 + PFR28_00710 0.65 +0.5
750,961 - PFR28_00710 0.66 -0.6
750,961 - PFR28_00710 0.66 +0.7
750,961 - PFR28_00710 0.66 -0.1
751,035 + PFR28_00710 0.72 -0.1
751,036 - PFR28_00710 0.72 +0.2
751,036 - PFR28_00710 0.72 +0.4
751,036 - PFR28_00710 0.72 +0.4
751,036 - PFR28_00710 0.72 +0.4
751,098 + PFR28_00710 0.78 +0.7
751,108 + PFR28_00710 0.79 -0.1
751,129 + PFR28_00710 0.81 -0.1
751,150 + PFR28_00710 0.82 +0.3
751,150 + PFR28_00710 0.82 +0.4
751,150 + PFR28_00710 0.82 -1.6
751,150 + PFR28_00710 0.82 +0.1
751,150 + PFR28_00710 0.82 +0.3
751,151 - PFR28_00710 0.83 +2.2
751,151 - PFR28_00710 0.83 -1.5
751,151 - PFR28_00710 0.83 +0.4
751,283 + +1.7
751,283 + -1.7
751,283 + +0.2
751,283 + -2.1
751,283 + +0.3
751,284 - -0.6
751,284 - -0.5
751,284 - -0.6
751,284 - -0.9
751,284 - +0.8
751,284 - -0.3
751,288 + -0.2
751,289 - -2.6
751,373 + +0.6
751,512 + +0.1
751,562 + -0.3
751,587 - -0.2
751,587 - -0.4
751,727 + PFR28_00711 0.14 -0.5
751,727 + PFR28_00711 0.14 -0.8
751,760 - PFR28_00711 0.16 -0.4
751,844 + PFR28_00711 0.21 -0.3
751,872 - PFR28_00711 0.22 -1.7
751,872 - PFR28_00711 0.22 -3.1
751,886 + PFR28_00711 0.23 -0.9
751,949 + PFR28_00711 0.27 +0.4
751,968 + PFR28_00711 0.28 +1.6
752,011 + PFR28_00711 0.31 +1.0
752,012 - PFR28_00711 0.31 -0.6
752,077 + PFR28_00711 0.35 +0.0
752,078 - PFR28_00711 0.35 +0.2
752,078 - PFR28_00711 0.35 -0.7
752,078 - PFR28_00711 0.35 +0.0
752,204 + PFR28_00711 0.42 -0.5
752,205 - PFR28_00711 0.42 +1.0
752,213 + PFR28_00711 0.43 +0.1
752,256 + PFR28_00711 0.46 -0.0

Or see this region's nucleotide sequence